Browse Element(s) Details


Os.9627.1.S1_at

Description gb:AK071450.1
DB_XREF= gi:32981473
TID=Os.9627.1
CNT=70
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.9627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098M18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023098M18, full insert sequence.
FL= gb:AK060893.1 gb:AK071450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0639011/11Actin-7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06360OsAffx.18706.1.S1_at1/1111+3051008..3051232hypothetical protein
LOC_Os11g06370Os.49272.1.S1_at11/1111+3059426..3061940expressed protein
LOC_Os11g06380Os.14919.1.S1_at5/1111+3062726..3067659transposon protein, putative, Mutator sub-class
LOC_Os11g06380OsAffx.29313.1.S1_at1/1111+3062726..3067659transposon protein, putative, Mutator sub-class
LOC_Os11g06390Os.9627.1.S1_at11/1111+3074781..3078111Actin-7, putative, expressed
LOC_Os11g06400OsAffx.27522.1.S1_x_at7/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.3613.1.S1_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.16187.1.S1_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.3613.1.S1_x_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06410Os.7265.1.S1_at11/1111+3087445..3092224expressed protein
LOC_Os11g06410Os.55232.1.S1_at1/1111+3087445..3092224expressed protein
LOC_Os11g06420Os.17428.1.S1_at11/1111+3094367..3098577Tubby protein, putative, expressed
LOC_Os11g06430OsAffx.30842.1.S1_at9/1111+3100925..3102996hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009733biological_processresponse to auxin stimulus
GO:0009845biological_processseed germination
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0048364biological_processroot development
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9627.1.S1_at--676--8711Chr11:3076835..3076859 (25 bp)
TGAGTCGGGTCCAGCAATTGTTCAC
LOC_Os11g06390
Os.9627.1.S1_at--324--4811Chr11:3076875..3076899 (25 bp)
GCTCTGGCTTTTTAATCGCTTATCT
LOC_Os11g06390
Os.9627.1.S1_at--412--8272Chr11:4849774..4849798 (25 bp)
GGCAGTTTCTTTTCAGTTTTCACAA
NONE
Os.9627.1.S1_at--270--3251Chr11:3076926..3076950 (25 bp)
CAAGCCCTTGTCATGTAAGCTACTC
LOC_Os11g06390
Os.9627.1.S1_at--823--7671Chr11:3076956..3076980 (25 bp)
GGGATTGTTGGTGTCCTATCAGAAT
LOC_Os11g06390
Os.9627.1.S1_at--741--10211Chr11:3077007..3077031 (25 bp)
TATTATGCACCTTCTGAACTCTTGG
LOC_Os11g06390
Os.9627.1.S1_at--698--5471Chr11:3077022..3077046 (25 bp)
GAACTCTTGGTATGCATTTGTCCGG
LOC_Os11g06390
Os.9627.1.S1_at--698--7251Chr11:3077041..3077065 (25 bp)
GTCCGGTGGCTGCTGTATTATACAT
LOC_Os11g06390
Os.9627.1.S1_at--974--8271Chr11:3077066..3077090 (25 bp)
GGCATGCATGGTCCAACTTTTGTCA
LOC_Os11g06390
Os.9627.1.S1_at--411--1311Chr11:3077133..3077157 (25 bp)
AGATGTACCCACTACCTAGGATCGT
LOC_Os11g06390
Os.9627.1.S1_at--141--3051Chr11:3077165..3077189 (25 bp)
AATCGTACTTGTGCGAGTCATGTTA
LOC_Os11g06390
Target Sequence 
TGAGTCGGGTCCAGCAATTGTTCACCGGAAGTGCTTCTAAGCTCTGGCTTTTTAATCGCTTATCTACAAGGCAGTTTCTT
TTCAGTTTTCACAAGCCCTTGTCATGTAAGCTACTCTGTTTGGGATTGTTGGTGTCCTATCAGAATGTTGTTGGATTTGT
TTCATGGCTGAATATTATGCACCTTCTGAACTCTTGGTATGCATTTGTCCGGTGGCTGCTGTATTATACATGGCATGCAT
GGTCCAACTTTTGTCATGCTAAGTTTGTGGTTAGTGGTAGGACCAAAAGAAAAATGGGAGATGTACCCACTACCTAGGAT
CGTCTATTGTAATCGTACTTGTGCGAGTCATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis