Browse Element(s) Details


Os.9663.1.S1_at

Description gb:AK120983.1
DB_XREF= gi:37990606
TID=Os.9663.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042D09, full insert sequence.
FL= gb:AK120983.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2055010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20510Os.25521.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510OsAffx.18309.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_x_at10/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_at9/1110+10005999..10011288expressed protein
LOC_Os10g20520OsAffx.30462.1.S1_at11/1110+10012486..10012787hypothetical protein
LOC_Os10g20530OsAffx.20486.1.S1_at11/1110+10018428..10019190hypothetical protein
LOC_Os10g20540OsAffx.20485.1.S1_at11/1110+10022517..10025503hypothetical protein
LOC_Os10g20550Os.9663.1.S1_at10/1110+10026433..10027152expressed protein
LOC_Os10g20560OsAffx.6710.1.S1_at10/1110+10028725..10029871hypothetical protein
LOC_Os10g20570NANA10+10035111..10039348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20580Os.27691.1.S1_x_at2/1110+10039925..10041108retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20580Os.27691.2.S1_x_at1/1110+10039925..10041108retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20590OsAffx.30463.1.S1_at11/1110+10045464..10047228hypothetical protein
LOC_Os10g20600Os.38168.2.S1_x_at11/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38168.2.S1_at10/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38168.1.S1_at7/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600OsAffx.18185.1.S1_s_at4/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600OsAffx.18311.1.S1_at3/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38368.1.S1_s_at2/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9663.1.S1_at--293--6331Chr10:10026524..10026548 (25 bp)
GATGCAAGATCTGCCGTTTGTTTCC
LOC_Os10g20550
Os.9663.1.S1_at--716--3811Chr10:10026548..10026572 (25 bp)
CTCCTAGTTCTTGTTCTGCTCGGAA
LOC_Os10g20550
Os.9663.1.S1_at--657--4971Chr10:10026430..10026789 (25 bp)
GCATCTGCAGCGATATGCGAGCATT
NONE
Os.9663.1.S1_at--69--3591Chr10:10026786..10026810 (25 bp)
CATTTTAGCACCAAGGACCTGTTCT
LOC_Os10g20550
Os.9663.1.S1_at--719--5831Chr10:10026801..10026825 (25 bp)
GACCTGTTCTGCATCAAGTACCTGT
LOC_Os10g20550
Os.9663.1.S1_at--808--871Chr10:10026898..10026922 (25 bp)
ATGGCCGCAGGTGCAACTGCAATGT
LOC_Os10g20550
Os.9663.1.S1_at--599--6851Chr10:10026921..10026945 (25 bp)
GTTTGCCACTGAATATTTGCCATGA
LOC_Os10g20550
Os.9663.1.S1_at--858--3111Chr10:10026945..10026969 (25 bp)
AATATTCAGGTTGTCGATCGATCCA
LOC_Os10g20550
Os.9663.1.S1_at--712--1151Chr10:10026969..10026993 (25 bp)
AGTCGTCTGGCTTGTGTTCAATTTA
LOC_Os10g20550
Os.9663.1.S1_at--563--6631Chr10:10027048..10027072 (25 bp)
GTTGTTAATTAGTTCGGCGGCATCA
LOC_Os10g20550
Os.9663.1.S1_at--675--9591Chr10:10027070..10027094 (25 bp)
TCATATAAGCCAGCCGTGTGGTCGT
LOC_Os10g20550
Target Sequence 
GATGCAAGATCTGCCGTTTGTTTCCTCCTAGTTCTTGTTCTGCTCGGAACTCCTACTGCATCTGCAGCGATATGCGAGCA
TTTTAGCACCAAGGACCTGTTCTGCATCAAGTACCTGTGCAGGGGTTTCTGCCACGACGAGGCCGTGAACCTGCGAGGGA
AGCACGCGCGCGTCATGCGTGCCTGGTGCCATGGCCGCAGGTGCAACTGCAATGTTTGCCACTGAATATTTGCCATGAAT
ATTCAGGTTGTCGATCGATCCAGTCGTCTGGCTTGTGTTCAATTTAGNTCNAGTNATTTTCAACTTATTCAGTCAACTTT
CACTNGGGGAATTCGTTGTNAGGTTGTTAATTAGTTCGGCGGCATCATATAAGCCAGCCGTGTGGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis