Browse Element(s) Details


Os.9686.1.S1_s_at

Description gb:BX928901
DB_XREF= gi:41884070
DB_XREF=BX928901
CLONE=y805b06p3
TID=Os.9686.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9686 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_197527.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4362011/11Haemolysin-III related family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43580NANA6+26207298..26211004hypothetical protein
LOC_Os06g43590Os.6788.1.S1_at11/116+26214503..26217659SNF7 family protein, expressed
LOC_Os06g43600Os.7771.1.S1_at10/116+26226111..26227738Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g43610Os.24754.1.S1_at11/116+26228860..26231827formamidopyrimidine-DNA glycosylase family protein, expressed
LOC_Os06g43620Os.9686.1.S1_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620OsAffx.28085.1.S1_x_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620Os.9686.1.S1_s_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43630OsAffx.15911.1.S1_x_at11/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43630Os.27130.1.S1_at10/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43640Os.11442.1.S1_at11/116+26253172..26258258expressed protein
LOC_Os06g43650Os.12151.1.S1_at11/116+26262130..26265825expressed protein
LOC_Os06g43650OsAffx.16811.1.S1_at1/116+26262130..26265825expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9686.1.S1_s_at--511--8271Chr06:26234435..26234459 (25 bp)
GGCATGTTCGACCTGTGCGGCCACA
LOC_Os06g43620
Os.9686.1.S1_s_at--1035--10531Chr06:26234345..26234369 (25 bp)
TTCATCCAGGCACGCGACGAGATGG
LOC_Os06g43620
Os.9686.1.S1_s_at--957--571Chr06:26234342..26234366 (25 bp)
ATCCAGGCACGCGACGAGATGGGCT
LOC_Os06g43620
Os.9686.1.S1_s_at--635--2211Chr06:26234283..26234307 (25 bp)
ACAAGAAAACATTTCTCTCCATGGA
LOC_Os06g43620
Os.9686.1.S1_s_at--588--7971Chr06:26234261..26234285 (25 bp)
GGATCGATGAACCAAATGATAATTC
LOC_Os06g43620
Os.9686.1.S1_s_at--1018--691Chr06:26234246..26234270 (25 bp)
ATGATAATTCGATACAGCAGAGTAC
LOC_Os06g43620
Os.9686.1.S1_s_at--522--4951Chr06:26234214..26234238 (25 bp)
GCATATATATACAGCGGTAGACGAT
LOC_Os06g43620
Os.9686.1.S1_s_at--411--2151Chr06:26234204..26234228 (25 bp)
ACAGCGGTAGACGATCGAATTAATT
LOC_Os06g43620
Os.9686.1.S1_s_at--1064--10491Chr06:26234136..26234160 (25 bp)
TTAAGTTTGTTTAGCTTGCAGGAGT
LOC_Os06g43620
Os.9686.1.S1_s_at--181--6111Chr06:26234115..26234139 (25 bp)
GAGTCGGTCATCAAGTGTGAGATAT
LOC_Os06g43620
Os.9686.1.S1_s_at--899--7451Chr06:26234086..26234110 (25 bp)
GTGTCGTCCGGTTAATGACAAGGAT
LOC_Os06g43620
Target Sequence 
GGCATGTTCGACCTGTGCGGCCACAGCCACCAGATNTTCCACGCGCTCGTCATCGCCGGNGCGCTCGCGCANTACGCCGC
CGCCATNGTNTTCATCCAGGCACGCGACGAGATGGGCTGCCCGGCGCCATAGCTAAGCTAGCGATNGAACACACAAGAAA
ACATTTCTCTCCATGGATCGATGAACCAAATGATAATTCGATACAGCAGAGTACNCAAGAAGCATATATATACAGCGGTA
GACGATCGAATTAATTGATTTGAGTGGTTTTGTTTTTGTGAGGTTTTTTTTTAAAATTTTTAAGTTTGTTTAGCTTGCAG
GAGTCGGTCATCAAGTGTGAGATATTACCNGTGTCGTCCGGTTAATGACAAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9686.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis