Browse Element(s) Details


Os.9687.1.S1_at

Description gb:AK070787.1
DB_XREF= gi:32980810
TID=Os.9687.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023067C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023067C07, full insert sequence.
FL= gb:AK070787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5799011/11methionine adenosyltransferase regulatory beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57940Os.53591.1.S1_at11/112+35476075..35478087F-box domain containing protein, expressed
LOC_Os02g57950OsAffx.24912.1.S1_at11/112+35481694..35482183hypothetical protein
LOC_Os02g57960OsAffx.3098.1.S1_at11/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57960Os.23175.1.S1_at1/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57970OsAffx.24913.1.S1_at10/112+35495498..35495790hypothetical protein
LOC_Os02g57980Os.26581.1.S1_at11/112+35496214..35501173DEAD/DEAH box helicase family protein, expressed
LOC_Os02g57990Os.9687.1.S1_at11/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g57990Os.56368.1.S1_at3/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g58000OsAffx.24914.1.S1_at11/112+35507203..35507472hypothetical protein
LOC_Os02g58010Os.13484.1.S1_at11/112+35509890..35511189expressed protein
LOC_Os02g58010OsAffx.24915.1.S1_at10/112+35509890..35511189expressed protein
LOC_Os02g58020Os.10758.1.S1_a_at11/112+35511679..35517489ABC transporter family protein, expressed
LOC_Os02g58030Os.38001.1.A1_at11/112+35520748..35527178leucine-rich repeat protein, putative, expressed
LOC_Os02g58040OsAffx.24916.1.S1_at10/112+35528270..35530261F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9687.1.S1_at--860--1171Chr02:35504077..35504101 (25 bp)
AGTACTCCTGAATGTCGGTGGACCA
LOC_Os02g57990
Os.9687.1.S1_at--902--5251Chr02:35504129..35504153 (25 bp)
GAATCTGTTGCTGATGTTCGTGGAT
LOC_Os02g57990
Os.9687.1.S1_at--190--8771Chr02:35504176..35504655 (25 bp)
TGTATCTGCTTCATCGGTTGACCGG
LOC_Os02g57990
Os.9687.1.S1_at--547--10571Chr02:35504664..35504688 (25 bp)
TTCTCCACCAGACATATCCATGGAT
LOC_Os02g57990
Os.9687.1.S1_at--806--6091Chr02:35504741..35504765 (25 bp)
GAGTCAGAGCTACACTTGCTGCAGA
LOC_Os02g57990
Os.9687.1.S1_at--966--5391Chr02:35504764..35504788 (25 bp)
GAAGCTAGTACATGACACTTTGTCT
LOC_Os02g57990
Os.9687.1.S1_at--645--5631Chr02:35504777..35504801 (25 bp)
GACACTTTGTCTGTTCATTTTGCCA
LOC_Os02g57990
Os.9687.1.S1_at--87--6751Chr02:35504789..35504813 (25 bp)
GTTCATTTTGCCAAGAGAGCTGCTT
LOC_Os02g57990
Os.9687.1.S1_at--1137--2751Chr02:35504842..35504866 (25 bp)
AAGAGCCACTTTCAGTTTGTTGAAC
LOC_Os02g57990
Os.9687.1.S1_at--668--2791Chr02:35504896..35504920 (25 bp)
AAGATGTAACTTTTCGACGGTGTGA
LOC_Os02g57990
Os.9687.1.S1_at--175--951Chr02:35504924..35504948 (25 bp)
AGGAAATTTTGCGTTCACCCGACAT
LOC_Os02g57990
Target Sequence 
AGTACTCCTGAATGTCGGTGGACCAGATAGAGTCTCAAGACTGCAGATGGCTGAATCTGTTGCTGATGTTCGTGGATANT
AGTCATTCTATAATCAAATCTGTATCTGCTTCATCGGTTGACCGGGGTGTAGCTTCTCCACCAGACATATCCATGGATAT
CNCCAAACTAACCCAAATGCTTGGTATCAAGCCAATTTCATTTCAAGATGGAGTCAGAGCTACACTTGCTGCAGAAGCTA
GTACATGACACTTTGTCTGTTCATTTTGCCAAGAGAGCTGCTTGGATTTGTCTGTGAAAGTATGTGAGATAAAGAGCCAC
TTTCAGTTTGTTGAACAGTGGCAAATCTGTGTTGAGTATATGTGAAAGATGTAACTTTTCGACGGTGTGAAAAAGGAAAT
TTTGCGTTCACCCGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis