Browse Element(s) Details


Os.9814.1.S1_at

Description gb:CF335135
DB_XREF= gi:33818623
DB_XREF=JMT--04-L05.b1
CLONE=JMT--04-L05
TID=Os.9814.1
CNT=27
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU066201(S5593),AU032549(S10727),AU088748(S5593)~unknown protein (P0460E08.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5557011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55530Os.33076.1.S1_at11/111+32318941..32323295expressed protein
LOC_Os01g55540Os.9.1.S1_s_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55540Os.9.1.S1_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55560Os.42067.2.S1_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.2.S1_x_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.1.S1_at10/111+32337326..32340070expressed protein
LOC_Os01g55570Os.9814.1.S1_at11/111+32341302..32343122expressed protein
LOC_Os01g55580Os.26583.2.S1_x_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55580Os.26583.1.A1_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55590Os.6706.1.S1_at9/111+32359021..32362185expressed protein
LOC_Os01g55590Os.6706.2.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55590Os.42065.1.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55600Os.32224.1.S1_at10/111+32359575..32361859POT family protein, expressed
LOC_Os01g55610Os.34952.1.S1_at10/111+32364872..32367226POT family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009773biological_processphotosynthetic electron transport in photosystem I
GO:0009941cellular_componentchloroplast envelope
GO:0030093cellular_componentphotosystem I (sensu Viridiplantae)
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9814.1.S1_at--128--5091Chr01:32341508..32341661 (25 bp)
GCACCAGATTTGTTTCAGGGAGGAT
LOC_Os01g55570
Os.9814.1.S1_at--204--6111Chr01:32341665..32341689 (25 bp)
GAGTCGCAATGTCGTCGCTGCAAAG
LOC_Os01g55570
Os.9814.1.S1_at--187--2951Chr01:32341687..32341711 (25 bp)
AAGGCTGCGCAGGACAGTTCAGAAC
LOC_Os01g55570
Os.9814.1.S1_at--418--1791Chr01:32341710..32341734 (25 bp)
ACCGTCATCCGGGAGCGTTGTGAAG
LOC_Os01g55570
Os.9814.1.S1_at--17--6931Chr01:32341734..32342041 (25 bp)
GTATGTCCAGAGTTCGTTCAGCAGT
LOC_Os01g55570
Os.9814.1.S1_at--576--6751Chr01:32342032..32342056 (25 bp)
GTTCAGCAGTCCTGAAGACCTCTTT
LOC_Os01g55570
Os.9814.1.S1_at--184--1391Chr01:32342047..32342071 (25 bp)
AGACCTCTTTGCTCTAGCTGGTATA
LOC_Os01g55570
Os.9814.1.S1_at--912--71Chr01:32342084..32342108 (25 bp)
ATTGCCGCATTATGGGCTTCTATAA
LOC_Os01g55570
Os.9814.1.S1_at--265--6731Chr01:32342228..32342252 (25 bp)
GTTCTCCCTCTACTCTTTGAATTAA
LOC_Os01g55570
Os.9814.1.S1_at--9--2431Chr01:32342367..32342391 (25 bp)
AAAACCTACTATTCAAGCCAGACAG
LOC_Os01g55570
Os.9814.1.S1_at--1122--9791Chr01:32342913..32342937 (25 bp)
TAACTCTTGCCGTCGTGATTCGCTT
LOC_Os01g55570
Target Sequence 
GCACCAGATTTGTTTCAGGGAGGATGAGGAGTCGCAATGTCGTCGCTGCAAAGGCTGCGCAGGACAGTTCAGAACCGTCA
TCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGC
AGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAAT
TAATTGGCATATTGGTTGCATGGTTGTTCATATATCAAAACCTACTATTCAAGCCAGACAGGGAAAAGTTTCTGAACAAC
ATCAAGAGTTCCGTATCTCGCGTCTTGGGGCAGTAATTTGAGGCGAAAATGGAGCACAAGCAGCCTTAACTCTTGCCGTC
GTGATTCGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis