Browse Element(s) Details


Os.9816.1.S1_a_at

Description gb:AK071789.1
DB_XREF= gi:32981812
TID=Os.9816.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9816 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110H14, full insert sequence.
FL= gb:AK071789.1 gb:AK105751.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4189011/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41860Os.16002.1.S1_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41860OsAffx.19314.1.S1_s_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41870Os.22949.1.S1_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870OsAffx.19315.1.S1_x_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11062.1.S1_at9/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11829.1.S1_at3/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.54779.1.S1_s_at1/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41880OsAffx.7379.1.S1_at10/1111+24679945..24682122Potyvirus VPg interacting protein, putative
LOC_Os11g41890Os.9816.1.S2_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41890Os.9816.1.S1_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41900Os.11801.1.S1_at11/1111+24698478..247046791-acyl-sn-glycerol-3-phosphate acyltransferase PLS1, putative, expressed
LOC_Os11g41910Os.20693.1.S1_at11/1111+24711520..24715404small GTP-binding protein domain containing protein, expressed
LOC_Os11g41910OsAffx.19316.1.S1_at10/1111+24711520..24715404small GTP-binding protein domain containing protein, expressed
LOC_Os11g41920Os.57421.1.S1_at10/1111+24716973..24721003expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9816.1.S1_a_at--610--8111Chr11:24692560..24692584 (25 bp)
GGACGATCAGCACGCTCTTAGCAAG
LOC_Os11g41890
Os.9816.1.S1_a_at--541--7011Chr11:24692683..24692707 (25 bp)
GTACTTTGAGCAGTTCGGGACGATC
LOC_Os11g41890
Os.9816.1.S1_a_at--683--10331Chr11:24692755..24692779 (25 bp)
TTTTGGGTTCATTACGTACGATTCG
LOC_Os11g41890
Os.9816.1.S1_a_at--449--7091Chr11:24692843..24692867 (25 bp)
GTCAAGCGCGCGGTTCCTAAGGAAC
LOC_Os11g41890
Os.9816.1.S1_a_at--831--2911Chr11:24692861..24692885 (25 bp)
AAGGAACTATCACCTGGGCCTAGCA
LOC_Os11g41890
Os.9816.1.S1_a_at--291--6711Chr11:24692889..24692913 (25 bp)
GTTCTCCTGTCGGTGGATTCAACTA
LOC_Os11g41890
Os.9816.1.S1_a_at--551--2531Chr11:24692909..24692933 (25 bp)
AACTATGCCGTGAACAGAGCCAATA
LOC_Os11g41890
Os.9816.1.S1_a_at--552--2511Chr11:24692933..24692957 (25 bp)
AACTTCCTCAATGGATACACCCAGG
LOC_Os11g41890
Os.9816.1.S1_a_at--309--9791Chr11:24692948..24692972 (25 bp)
TACACCCAGGGTTATAATCCGAGCC
LOC_Os11g41890
Os.9816.1.S1_a_at--15--6331Chr11:24692999..24693023 (25 bp)
GATGCAAGGTTTGGGCTTCTATCGG
LOC_Os11g41890
Os.9816.1.S1_a_at--248--7551Chr11:24693024..24693048 (25 bp)
GTGGCCGTAGTAGTTATCCTTCTTT
LOC_Os11g41890
Target Sequence 
GGACGATCAGCACGCTCTTAGCAAGAGCGGNGGGAGCGCTCATGGATCGCCGGGGCCCAGCCGCACCAAGAAGATATTCG
TNGGGGGGCTAGCGTCCACCGTGACGGAGGCGGACTTCAGGAAGTACTTTGAGCAGTTCGGGACGATCACCGANGTCGTG
GTGATGTANGATCACAACACGCAGCGTCCCAGNGGTTTTGGGTTCATTACGTACGATTCGGAGGATGCTGTGGACAAGGC
ATTGTTCAAGACCTTCCATGAACTGAACGGTAAGATGGTTGAGGTCAAGCGCGCGGTTCCTAAGGAACTATCACCTGGGC
CTAGCATGCGTTCTCCTGTCGGTGGATTCAACTATGCCGTGAACAGAGCCAATAACTTCCTCAATGGATACACCCAGGGT
TATAATCCGAGCCCAGTCGGTGGCTATGGAATGAGGATGGATGCAAGGTTTGGGCTTCTATCGGGTGGCCGTAGTAGTTA
TCCTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9816.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis