Browse Element(s) Details


Os.9869.1.S1_at

Description gb:AK104999.2
DB_XREF= gi:42821614
TID=Os.9869.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9869 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-E11, full insert sequence.
FL= gb:AK121802.1 gb:AK104999.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2312011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23090OsAffx.10633.1.S1_at7/118+13775243..13776999retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23090OsAffx.30389.1.S1_x_at2/118+13775243..13776999retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23100Os.55409.1.S1_at10/118+13780107..13786943cyclase family protein, putative, expressed
LOC_Os08g23100OsAffx.15945.1.S1_at1/118+13780107..13786943cyclase family protein, putative, expressed
LOC_Os08g23110Os.33205.1.S1_at11/118+13787131..13792601tRNA synthetases class I family protein, expressed
LOC_Os08g23110Os.33205.1.S1_x_at11/118+13787131..13792601tRNA synthetases class I family protein, expressed
LOC_Os08g23120Os.9869.1.S1_at11/118+13797608..13801838RNA recognition motif family protein, expressed
LOC_Os08g23130Os.50452.2.S1_x_at11/118+13804750..13809222Oligopeptide transporter 5, putative, expressed
LOC_Os08g23140Os.14494.1.S1_at11/118+13810994..13817843expressed protein
LOC_Os08g23140Os.53108.1.S1_at1/118+13810994..13817843expressed protein
LOC_Os08g23150Os.17629.1.A1_at11/118+13821689..13825571Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os08g23150OsAffx.21707.1.S1_at1/118+13821689..13825571Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9869.1.S1_at--527--10411Chr08:13801262..13801286 (25 bp)
TTTTGGTGGTTCTAGCTATGGCCCT
LOC_Os08g23120
Os.9869.1.S1_at--301--1571Chr08:13801275..13801299 (25 bp)
AGCTATGGCCCTAGTTATGACTCTT
LOC_Os08g23120
Os.9869.1.S1_at--323--10131Chr08:13801290..13801314 (25 bp)
TATGACTCTTCTTCAGGTCCTGGTG
LOC_Os08g23120
Os.9869.1.S1_at--185--171Chr08:13801325..13801349 (25 bp)
CTTTGGCACGGGTGGACTCTATGGT
LOC_Os08g23120
Os.9869.1.S1_at--665--4911Chr08:13801383..13801407 (25 bp)
GCTTCTGGTCGTTATCATCCATATG
LOC_Os08g23120
Os.9869.1.S1_at--10--9791Chr08:13801528..13801552 (25 bp)
TAAGGTTATGTACCTCTCCTGCTAG
LOC_Os08g23120
Os.9869.1.S1_at--207--9271Chr08:13801544..13801568 (25 bp)
TCCTGCTAGATTTGGCTCTGCTAAG
LOC_Os08g23120
Os.9869.1.S1_at--74--1831Chr08:13801577..13801601 (25 bp)
ACGCCTGTTAGATTGGCTCTGCTAA
LOC_Os08g23120
Os.9869.1.S1_at--191--31Chr08:13801588..13801612 (25 bp)
ATTGGCTCTGCTAAGGTTGCTGTAC
LOC_Os08g23120
Os.9869.1.S1_at--474--9271Chr08:13801616..13801640 (25 bp)
TCCTGACTCCTGTTAGATTGGCTTG
LOC_Os08g23120
Os.9869.1.S1_at--41--5931Chr08:13801764..13801788 (25 bp)
GAGCATATTTTCTGTGGATCTTTCC
LOC_Os08g23120
Target Sequence 
TTTTGGTGGTTCTAGCTATGGCCCTAGTTATGACTCTTCTTCAGGTCCTGGTGCTGGTGTTGGCTTTGGCACGGGTGGAC
TCTATGGTGCTAGAGGAGGCTATGGTAGCAGTGGTGCTGGTGCTTCTGGTCGTTATCATCCATATGCAAGGTAGACAGCT
TCAGATGCTGCCATGTGTGTGTTAGATAAGCTTGCAGAAGGTCGGTACTAGACAAGGCAAGATAAATTATCTGCAGCTAG
AAAAGAAGAGTTGAAGTTTAATCTGCTAAGGTTATGTACCTCTCCTGCTAGATTTGGCTCTGCTAAGGTTTATGTACGCC
TGTTAGATTGGCTCTGCTAAGGTTGCTGTACCACTCCTGACTCCTGTTAGATTGGCTTGTAGAATTTAAAATCACTTTTT
CAGTGTTTAGAATTCAAGAGATCGCACATATGCTTTGATTAGATAGCAAAGTCACTATGGCTGTTAGTTTAGCTCGTATT
TAGTCGATTTGAGATGCAACTGGAGCATATTTTCTGTGGATCTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis