Browse Element(s) Details


Os.9929.1.S1_at

Description gb:AK061390.1
DB_XREF= gi:32971408
TID=Os.9929.1
CNT=26
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.9929 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-039-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-C05, full insert sequence.
FL= gb:AK104791.1 gb:AK061390.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6050911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60449NANA3+34310640..34311682hypothetical protein
LOC_Os03g60460Os.15432.1.S1_at10/113+34317091..34321293Peptidase family M1 containing protein, expressed
LOC_Os03g60470Os.53476.1.S1_at11/113+34321693..34323295expressed protein
LOC_Os03g60480Os.8144.1.S1_at11/113+34324835..34327108heavy metal-associated domain containing protein, expressed
LOC_Os03g60500OsAffx.28855.3.S1_x_at5/113+34330365..34332169hypothetical protein
LOC_Os03g60509Os.9929.1.S1_at11/113+34333429..34334598expressed protein
LOC_Os03g60520Os.52542.1.S1_at1/113+34336350..34339211expressed protein
LOC_Os03g60524Os.29987.1.S1_at6/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60524Os.43567.1.S1_x_at3/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60524Os.38172.1.S1_x_at2/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60530Os.9042.1.S1_at10/113+34346027..34349308Ras-related protein ARA-3, putative, expressed
LOC_Os03g60540OsAffx.13562.1.S1_at11/113+34349796..34350356Zinc finger, C2H2 type family protein
LOC_Os03g60550Os.17427.1.S1_at11/113+34351774..34358073ThiF family protein, expressed
LOC_Os03g60550OsAffx.25657.1.S1_s_at1/113+34351774..34358073ThiF family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009813biological_processflavonoid biosynthesis
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0045430molecular_functionchalcone isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9929.1.S1_at--172--7211Chr03:34334069..34334169 (25 bp)
GTCGTCACCGGCGATTTCGAGAAGT
LOC_Os03g60509
Os.9929.1.S1_at--941--1871Chr03:34334042..34334066 (25 bp)
ACGAGGGTGACGATGATCCTGCCGC
LOC_Os03g60509
Os.9929.1.S1_at--34--9211Chr03:34333745..34333769 (25 bp)
TCCAAGGACTCGTCGGTGCCAGAGG
LOC_Os03g60509
Os.9929.1.S1_at--655--4051Chr03:34333702..34333726 (25 bp)
CGATCGAGAACAGGGCGCTCTGCGA
LOC_Os03g60509
Os.9929.1.S1_at--677--9271Chr03:34333597..34333621 (25 bp)
TCCTGAAGGCGGAATCCACCGGCGA
LOC_Os03g60509
Os.9929.1.S1_at--705--4251Chr03:34333550..34333574 (25 bp)
CCGGTGTCCGCGTGAAAATCGAGCT
LOC_Os03g60509
Os.9929.1.S1_at--730--2271Chr03:34333535..34333559 (25 bp)
AAATCGAGCTGCGAATTAACCGCGC
LOC_Os03g60509
Os.9929.1.S1_at--348--3131Chr03:34333522..34333546 (25 bp)
AATTAACCGCGCATCTAAGAGCTCC
LOC_Os03g60509
Os.9929.1.S1_at--1150--9771Chr03:34333507..34333531 (25 bp)
TAAGAGCTCCTCCTACACTTCTTGT
LOC_Os03g60509
Os.9929.1.S1_at--971--9851Chr03:34333494..34333518 (25 bp)
TACACTTCTTGTACACTTCTACTGC
LOC_Os03g60509
Os.9929.1.S1_at--889--9911Chr03:34333475..34333499 (25 bp)
TACTGCCCTCGTGTTTGACAATGAA
LOC_Os03g60509
Target Sequence 
GTCGTCACCGGCGATTTCGAGAAGTTCACGAGGGTGACGATGATCCTGCCGCTCACCGGCGAGCAGTACTCGGACAAGGT
GACGGAGAACTGCGTCGCGGCGTGGAAGGCCGCCGGCGTGTACACGGACGCCGAGGGCGCGGCCGCGGACAAGTTCAAGG
AGGCCTTCAAGCCCCACAGCTTCCCTCCGGGCGCGTCCATCCTCTTCACCCACTCCCCGCCCGGCGTCCTCACCGTCGCG
TTCTCCAAGGACTCGTCGGTGCCAGAGGGCGCCGTGGCGGCGGCGGCGATCGAGAACAGGGCGCTCTGCGAGGCGGTGCT
GGATTCCATCATCGGCGAGCACGGGGTCTCGCCGGCGGCGAAGCGGAGCATAGCGGCCCGCGTCTCGCAGCTCCTGAAGG
CGGAATCCACCGGCGACGTGGCGGCGGCGGAGCCCGCGCCGGTGTCCGCGTGAAAATCGAGCTGCGAATTAACCGCGCAT
CTAAGAGCTCCTCCTACACTTCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis