Browse Element(s) Details


Os.9956.1.S1_at

Description gb:AU082529
DB_XREF= gi:6984553
DB_XREF=AU082529
CLONE=E30820
TID=Os.9956.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9956 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_201460.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5230011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52239OsAffx.25688.1.S1_at11/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52239OsAffx.3581.1.S1_at10/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52239OsAffx.17864.1.S1_x_at1/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52258OsAffx.13466.1.S1_at10/113+29964436..29964755hypothetical protein
LOC_Os03g52280NANA3+29973887..29975263hypothetical protein
LOC_Os03g52284NANA3+29977524..29979158expressed protein
LOC_Os03g52290OsAffx.3582.1.S1_x_at11/113+29983078..29983773hypothetical protein
LOC_Os03g52300Os.9956.1.S1_at11/113+29984664..29987427expressed protein
LOC_Os03g52300OsAffx.6133.1.S1_at9/113+29984664..29987427expressed protein
LOC_Os03g52310Os.7726.1.S1_at10/113+29989628..29993399hAT family dimerisation domain containing protein, expressed
LOC_Os03g52320Os.50790.1.S1_at11/113+29995741..29999342SSXT protein containing protein, expressed
LOC_Os03g52330OsAffx.25690.1.S1_at10/113+30009207..30010173hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9956.1.S1_at--367--1131Chr03:29986952..29986976 (25 bp)
AGTGCGGCACCTACACCCAGGTGGT
LOC_Os03g52300
Os.9956.1.S1_at--409--1371Chr03:29986662..29986686 (25 bp)
AGAGCTGCGTGCGTGCTTAAGATTT
LOC_Os03g52300
Os.9956.1.S1_at--42--7311Chr03:29986654..29986678 (25 bp)
GTGCGTGCTTAAGATTTGGACTGAA
LOC_Os03g52300
Os.9956.1.S1_at--750--10831Chr03:29986618..29986642 (25 bp)
TTGTGACGCGCGTGTCAGCACGTGC
LOC_Os03g52300
Os.9956.1.S1_at--618--7111Chr03:29986605..29986629 (25 bp)
GTCAGCACGTGCTGCTTGGAGTGTA
LOC_Os03g52300
Os.9956.1.S1_at--81--5111Chr03:29986601..29986625 (25 bp)
GCACGTGCTGCTTGGAGTGTAGCTT
LOC_Os03g52300
Os.9956.1.S1_at--62--6131Chr03:29986587..29986611 (25 bp)
GAGTGTAGCTTGTGATATGGCTCTT
LOC_Os03g52300
Os.9956.1.S1_at--1009--271Chr03:29986573..29986597 (25 bp)
ATATGGCTCTTGAATTCGAATGCTA
LOC_Os03g52300
Os.9956.1.S1_at--216--4811Chr03:29986568..29986592 (25 bp)
GCTCTTGAATTCGAATGCTAGGTTT
LOC_Os03g52300
Os.9956.1.S1_at--245--4871Chr03:29986552..29986576 (25 bp)
GCTAGGTTTGTGTAGATCCACCCAT
LOC_Os03g52300
Os.9956.1.S1_at--1149--8731Chr03:29986542..29986566 (25 bp)
TGTAGATCCACCCATGAGCCATGAG
LOC_Os03g52300
Target Sequence 
AGTGCGGCACCTACACCCAGGTGGTGTGGCGCCGCACGGCGGAGGTCGGCTGCGCCCAGGCCACNTNGCACCACCGGCGC
CACGCTCACCATCTNGCCTCTNACAACCCGCACGGNAACGTGCAGGGNCNAGAGCCCCNTACTGACCGGTCTCTTCGCCG
CCNGCCNTCGCCNGTCGCCGTCGACGTCGCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTG
ACTGTGGTGTGTGATCTTGTCTGTGTACTCTTGTGTTATTACGCCTACGTGGTGTTTAGAGCTGCGTGCGTGCTTAAGAT
TTGGACTGAAAATGATGGATGTTGTGACGCGCGTGTCAGCACGTGCTGCTTGGAGTGTAGCTTGTGATATGGCTCTTGAA
TTCGAATGCTAGGTTTGTGTAGATCCACCCATGAGCCATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis