Browse Element(s) Details


Os.9986.1.S1_at

Description gb:AK120763.1
DB_XREF= gi:37990386
TID=Os.9986.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9986 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007G17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007G17, full insert sequence.
FL= gb:AK120763.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g197002/11Cycloeucalenol cycloisomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19640OsAffx.22699.1.S1_x_at1/1111+11294220..11297972retrotransposon protein, putative, unclassified
LOC_Os11g19650NANA11+11298370..11301540hypothetical protein
LOC_Os11g19660NANA11+11303299..11305888hypothetical protein
LOC_Os11g19670NANA11+11307431..11307996hypothetical protein
LOC_Os11g19680OsAffx.22896.1.S1_x_at1/1111+11309356..11309790transposon protein, putative, unclassified
LOC_Os11g19690Os.36749.2.A1_at1/1111+11312771..11316001transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19690OsAffx.25001.1.S1_at1/1111+11312771..11316001transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19690Os.50043.1.A1_at1/1111+11312771..11316001transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19700Os.9986.1.S1_at2/1111+11319876..11325715Cycloeucalenol cycloisomerase, putative, expressed
LOC_Os11g19710OsAffx.18946.1.S1_at11/1111+11328691..11332813hypothetical protein
LOC_Os11g19720Os.53689.1.S1_at11/1111+11339385..11346231recA protein, expressed
LOC_Os11g19720Os.8839.2.S1_at1/1111+11339385..11346231recA protein, expressed
LOC_Os11g19720Os.8839.2.S1_x_at1/1111+11339385..11346231recA protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016126biological_processsterol biosynthesis
GO:0047793molecular_functioncycloeucalenol cycloisomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9986.1.S1_at--1038--351Chr11:11325602..11325626 (25 bp)
ATAATCCTCGACCTGTGGCGCATAT
LOC_Os11g19700
Os.9986.1.S1_at--670--3151Chr11:11325637..11325661 (25 bp)
AATTGTACCCATCCCTGAATCAAGA
LOC_Os11g19700
Os.9986.1.S1_at--172--6011Chr11:11325704..11325728 (25 bp)
GAGAGCGTCTAACCCAGCAATGCCG
NONE
Os.9986.1.S1_at--948--8191Chr11:11325793..11325817 (25 bp)
GGAAGTTCTAGTGTGGCGTCAGCAT
NONE
Os.9986.1.S1_at--992--3391Chr11:11325834..11325858 (25 bp)
CAGCTTGATTTGTTTCTTGTATGCG
NONE
Os.9986.1.S1_at--521--10791Chr11:11325850..11325874 (25 bp)
TTGTATGCGATGTCCCATGGGTAAC
NONE
Os.9986.1.S1_at--600--10091Chr11:11325917..11325941 (25 bp)
TAGGATTTATGAGCCGACAGCCGGA
NONE
Os.9986.1.S1_at--211--10871Chr11:11326003..11326027 (25 bp)
TTGGATTTGCTATGTTCGTTGCGCC
NONE
Os.9986.1.S1_at--323--9231Chr11:11326018..11326042 (25 bp)
TCGTTGCGCCCTGTTTTAGGGAGTT
NONE
Os.9986.1.S1_at--176--6851Chr11:11326040..11326064 (25 bp)
GTTTCCAGTAGCTGTACATACTCCC
NONE
Os.9986.1.S1_at--992--7411NONE
GTGTTGACTATGAGCATCCTACTAT
NONE
Target Sequence 
ATAATCCTCGACCTGTGGCGCATATTCTTGGGGCCAATTGTACCCATCCCTGAATCAAGACGCTGCGGTCAACCGGGGCT
TGCATGGTTCCAGGTGCAGAANGAGAGCGTCTAACCCAGCAATGCCGCGAATTCGACAGCNAACCATCATCAGCTACGCC
TACCATTCTCCAGCCAGTCCTCCCCTCTACTGGAAGTTCTAGTGTGGCGTCAGCATGTGCGCCTCTTGCTGTCAGCTTGA
TTTGTTTCTTGTATGCGATGTCCCATGGGTAACAACTAGTAAGGATGCTGATATGGTTTTCTTGATCTAGAATACTAGGA
TTTATGAGCCGACAGCCGGACAGATACTCCAATAAGCTATAACAATAAAGATTCTTTGATGTGATCAGAAGTTGAGTTGT
GTTGGATTTGCTATGTTCGTTGCGCCCTGTTTTAGGGAGTTTCCAGTAGCTGTACATACTCCCNAAATTCATCCTAACTA
GTGTATGAAGTCACATTCGTGTTGACTATGAGCATCCTACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis