Browse Element(s) Details


OsAffx.10118.1.S1_at

Description gb:NM_187151.1
DB_XREF= gi:34901387
GEN=OSJNBb0062P14.24
TID=OsAffx.10118.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0062P14.24 (OSJNBb0062P14.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2701011/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26974Os.22838.2.S1_at11/117+15616636..15620244expressed protein
LOC_Os07g26974Os.22838.3.S1_x_at11/117+15616636..15620244expressed protein
LOC_Os07g26974Os.22838.1.S1_x_at11/117+15616636..15620244expressed protein
LOC_Os07g26974OsAffx.28613.1.S1_at1/117+15616636..15620244expressed protein
LOC_Os07g26990OsAffx.16432.1.S1_at10/117+15622895..15624094hypothetical protein
LOC_Os07g27000OsAffx.22355.1.S1_at11/117+15625101..15629991retrotransposon protein, putative, unclassified
LOC_Os07g27010OsAffx.10118.1.S1_at11/117+15643088..15646302retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27020OsAffx.422.1.S1_at1/117+15651505..15651993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27030OsAffx.22354.2.S1_s_at11/117+15657897..15660368F-box domain containing protein
LOC_Os07g27030OsAffx.22354.1.S1_at10/117+15657897..15660368F-box domain containing protein
LOC_Os07g27040OsAffx.22353.1.S1_at11/117+15663358..15663779hypothetical protein
LOC_Os07g27050OsAffx.28614.1.S1_at10/117+15670155..15671326hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10118.1.S1_at--899--191Chr07:15643953..15643977 (25 bp)
ATTTGCTATGCTTTAGTTTCCCACC
LOC_Os07g27010
OsAffx.10118.1.S1_at--545--2571Chr07:15643899..15643923 (25 bp)
AACGGTCTTGTGCTCCAAGGGATCA
LOC_Os07g27010
OsAffx.10118.1.S1_at--383--5811Chr07:15643873..15643897 (25 bp)
GACCCACGTCTACGATAGGCTTATG
LOC_Os07g27010
OsAffx.10118.1.S1_at--267--5371Chr07:15643827..15643851 (25 bp)
GAAGAGCTCACATCCGTCTTATGGG
LOC_Os07g27010
OsAffx.10118.1.S1_at--481--2411Chr07:15643623..15643793 (25 bp)
AAACACTGTTCTTTCTCGTCTGCAT
LOC_Os07g27010
OsAffx.10118.1.S1_at--1019--1131Chr07:15643585..15643609 (25 bp)
AGTCCCTATGCCGATATCAAGAGAA
LOC_Os07g27010
OsAffx.10118.1.S1_at--121--1351Chr07:15643566..15643590 (25 bp)
AGAGAAACGTGTTCGAGCCCGCACA
LOC_Os07g27010
OsAffx.10118.1.S1_at--67--9191Chr07:15643539..15643563 (25 bp)
TGCCGTCAGCGATTATGTCCTACGA
LOC_Os07g27010
OsAffx.10118.1.S1_at--60--2191Chr07:15643459..15643483 (25 bp)
ACACAGTGGTTCGAGTATTGCGGCC
LOC_Os07g27010
OsAffx.10118.1.S1_at--641--6871Chr07:15643445..15643469 (25 bp)
GTATTGCGGCCAGACGCTTTCAAAA
LOC_Os07g27010
OsAffx.10118.1.S1_at--838--631Chr07:15643119..15643143 (25 bp)
ATGCTTTAGAGCCATACGACCATGT
LOC_Os07g27010
Target Sequence 
ATTTGCTATGCTTTAGTTTCCCACCCTCAGAGTAACGGACAAGTCGAACAAGCCAACGGTCTTGTGCTCCAAGGGATCAA
GACCCACGTCTACGATAGGCTTATGTCTTATGATACACAATGGGTCGAAGAGCTCACATCCGTCTTATGGGCCATCCACA
CCACTCCAACTTTGTCCAACAAAGAAACACTGTTCTTTCTCGTCTGCATACCAGCAGTCCCTAGTCCCTATGCCGATATC
AAGAGAAACGTGTTCGAGCCCGCACACTTGCCGTCAGCGATTATGTCCTACGACGAGTTCAATCCCAAGCAGGGAAGAAC
AAGCTTTCCCCCAAATGGGAGGGACCATACACAGTGGTTCGAGTATTGCGGCCAGACGCTTTCAAAATTGCAGATGGTGA
AGGACGCGGATTATCTAATTCTTGGAACATTGATATGTTACGTAACTTTTATGTATAGCTCCAATGTATCCACATCTCCT
CCGAGGTGCCTATGGGGATCTTGGCTAGGGACGCCCAGAGCTGATAAGGTGATGTCAGATGCTTTAGAGCCATACGACCA
TGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis