Browse Element(s) Details


OsAffx.10155.1.S1_x_at

Description gb:NM_186938.1
DB_XREF= gi:34900961
GEN=OJ1370_E02.22
TID=OsAffx.10155.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) similar to reverse transcriptase (OJ1370_E02.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1566011/11retrotransposon protein, putative, LINE subclass
LOC_Os07g129501/11transposon protein, putative, Mutator sub-class
LOC_Os11g181201/11retrotransposon protein, putative, LINE subclass
LOC_Os03g053801/11hypothetical protein
LOC_Os04g030801/11subtilase family protein, putative
LOC_Os03g277101/11retrotransposon protein, putative, unclassified
LOC_Os08g290301/11hypothetical protein
LOC_Os03g106101/11retrotransposon protein, putative, unclassified
LOC_Os05g251401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15630Os.31312.5.S1_x_at4/117+9061231..9064519retrotransposon protein, putative, unclassified
LOC_Os07g15630Os.31312.2.S1_x_at4/117+9061231..9064519retrotransposon protein, putative, unclassified
LOC_Os07g15640Os.44215.1.S1_at10/117+9070161..9076095pentatricopeptide, putative, expressed
LOC_Os07g15650OsAffx.22393.1.S1_at5/117+9079729..9080546hypothetical protein
LOC_Os07g15660OsAffx.10155.1.S1_x_at11/117+9089056..9093538retrotransposon protein, putative, LINE subclass
LOC_Os07g15660OsAffx.10155.1.S1_at11/117+9089056..9093538retrotransposon protein, putative, LINE subclass
LOC_Os07g15670Os.25507.1.S1_at10/117+9097402..9101211expressed protein
LOC_Os07g15680Os.5744.1.S1_at11/117+9103800..9111224Phospholipase D beta 1, putative, expressed
LOC_Os07g15690OsAffx.22421.3.S1_at11/117+9115421..9118253transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15690OsAffx.22421.2.S1_at2/117+9115421..9118253transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10155.1.S1_x_at--740--27921Chr11:10180332..10180354 (23 bp)
AAGATGGGATATTATTTGCCAACCC
LOC_Os11g18120
OsAffx.10155.1.S1_x_at--684--9555Chr07:9092726..9092750 (25 bp)
TCTTAAACATGGGTTCCTGGATTCT
LOC_Os07g15660
OsAffx.10155.1.S1_x_at--482--2872Chr07:9092810..9092834 (25 bp)
AAGGTAGGTATCCATCTCTCTATGC
LOC_Os07g15660
OsAffx.10155.1.S1_x_at--41--473Chr07:9092823..9092847 (25 bp)
ATCTCTCTATGCTATTGTTCGAAGG
LOC_Os07g15660
OsAffx.10155.1.S1_x_at--223--1232Chr07:9092851..9092875 (25 bp)
AGTTCTTCAGTTGCTAATGTTACGA
LOC_Os07g15660
OsAffx.10155.1.S1_x_at--590--6772Chr07:9092869..9092893 (25 bp)
GTTACGAGACCTGTTCCGCTAAATG
LOC_Os07g15660
OsAffx.10155.1.S1_x_at--609--5292Chr07:9093012..9093036 (25 bp)
GAATGGCCAATTTTCTGTCCGGTCA
LOC_Os07g15660
OsAffx.10155.1.S1_x_at--724--172Chr07:9093021..9093045 (25 bp)
ATTTTCTGTCCGGTCAATGTATCTG
LOC_Os07g15660
OsAffx.10155.1.S1_x_at--1019--8192Chr07:9093089..9093113 (25 bp)
GGAAGTCTAAGATGCCTCTGAAGAT
LOC_Os07g15660
OsAffx.10155.1.S1_x_at--74--2591Chr07:9093477..9093501 (25 bp)
AACGCACTGGCTCAGGTCTTGGGTA
LOC_Os07g15660
OsAffx.10155.1.S1_x_at--203--8491Chr07:9093484..9093508 (25 bp)
TGGCTCAGGTCTTGGGTACTGCTAC
LOC_Os07g15660
Target Sequence 
AAGATGGGATATTATTTGCCAACCCAAAGATCAGGGTCTTATGAAAGTTAAGAATACTTTCTTAAACATGGGTTCCTGGA
TTCTGAATAATAGGGAACAAGTTAGATTCTGGGAAGATAAATGGCTAGATAACTTAGTGTTTAAAGGTAGGTATCCATCT
CTCTATGCTATTGTTCGAAGGAAAAGTTCTTCAGTTGCTAATGTTACGAGACCTGTTCCGCTAAATGTTTCTTTTATGAG
GGCTTTAGTTGGTCAGAATCTAGCAAAGTGGTATGAATTGTGGGCTTCTATTGTACATATTGAGTTGAATCAACAGAGTG
ATTGTTTTAGATGGAACTATCATCAGAATGGCCAATTTTCTGTCCGGTCAATGTATCTGGCTTTAATAAACAATGGTTAT
ATTGAGAGAAATAAGATTATTTGGAAGTCTAAGATGCCTCTGAAGATTAAGATCTTTGTGTGGTACTTGCTTAAAGGGGT
AGTATTAACTAAAGATAATTTGGCAAGGAGGAACTGGAATGGAAGGCAACGCACTGGCTCAGGTCTTGGGTACTGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10155.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis