Browse Element(s) Details


OsAffx.10183.1.S1_at

Description gb:NM_186814.1
DB_XREF= gi:34900713
TID=OsAffx.10183.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (P0418E08.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1393011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13880OsAffx.16249.1.S1_at11/117+7939884..7940728Soluble starch synthase 2-3, chloroplast precursor, putative
LOC_Os07g13890Os.35797.1.S1_at11/117+7941060..7943204F-box domain containing protein, expressed
LOC_Os07g13900OsAffx.22410.1.S1_at11/117+7948931..7950466F-box domain containing protein
LOC_Os07g13910OsAffx.28434.1.S1_at11/117+7951250..7952616hypothetical protein
LOC_Os07g13920OsAffx.5322.1.S1_at11/117+7954360..7955484No apical meristem protein
LOC_Os07g13930OsAffx.10183.1.S1_at11/117+7964764..7966118F-box domain containing protein, expressed
LOC_Os07g13940OsAffx.5324.1.S1_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940OsAffx.5324.1.S1_x_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940Os.36218.2.S1_x_at3/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13950Os.30861.1.S1_at2/117+7971781..7974078hypothetical protein
LOC_Os07g13960OsAffx.32036.1.S1_at2/117+7976222..7977932hypothetical protein
LOC_Os07g13980Os.25696.2.S1_x_at11/117+7980847..7987587Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast precursor, putative, expressed
LOC_Os07g13980OsAffx.16251.1.S1_at11/117+7980847..7987587Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast precursor, putative, expressed
LOC_Os07g13990OsAffx.22409.1.S1_at11/117+7989621..7993123hypothetical protein
LOC_Os07g13990OsAffx.10179.1.S1_at11/117+7989621..7993123hypothetical protein
LOC_Os07g13990OsAffx.28435.2.S1_s_at1/117+7989621..7993123hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10183.1.S1_at--964--1171Chr07:7965455..7965479 (25 bp)
AGTACCGGCAGGTGGACATCCGCCT
LOC_Os07g13930
OsAffx.10183.1.S1_at--670--5771Chr07:7965541..7965565 (25 bp)
GACGACGAGCCGTTCGGCCATGTCA
LOC_Os07g13930
OsAffx.10183.1.S1_at--328--8651Chr07:7965616..7965640 (25 bp)
TGGGCCGTGGAGTACGCTTCGTTCA
LOC_Os07g13930
OsAffx.10183.1.S1_at--1128--9431Chr07:7965710..7965734 (25 bp)
TCGGCATGCCGGGATCCGTCACGGA
LOC_Os07g13930
OsAffx.10183.1.S1_at--543--1071Chr07:7965734..7965758 (25 bp)
AGGGCACGATCGAGTTCAAGTCCAA
LOC_Os07g13930
OsAffx.10183.1.S1_at--77--6751Chr07:7965747..7965771 (25 bp)
GTTCAAGTCCAACGGCGAGCTCGAG
LOC_Os07g13930
OsAffx.10183.1.S1_at--539--1591Chr07:7965764..7965788 (25 bp)
AGCTCGAGGAGATGTCCTGCCGCGA
LOC_Os07g13930
OsAffx.10183.1.S1_at--1016--9251Chr07:7965778..7965802 (25 bp)
TCCTGCCGCGAGATGAGGTTCTACA
LOC_Os07g13930
OsAffx.10183.1.S1_at--559--1611Chr07:7965809..7965833 (25 bp)
AGCTGATGCAGATGCTCCGCGGGAT
LOC_Os07g13930
OsAffx.10183.1.S1_at--785--6171Chr07:7966024..7966048 (25 bp)
GAGGAGAGGCTCACCTGCGACCTTC
LOC_Os07g13930
OsAffx.10183.1.S1_at--1082--9311Chr07:7966063..7966087 (25 bp)
TCGCGCCACGTCTGATTTCTGCCAT
LOC_Os07g13930
Target Sequence 
AGTACCGGCAGGTGGACATCCGCCTCCAGCTGCTCAAGCTGCTCGTCATGGACGACGTCAGCGTCGGCCCGCCATGCCGC
AAGAACGACGACGAGCCGTTCGGCCATGTCACCGTCGACGCGCCGGCGCTGGACGAGCTCGTGGTGGTCTGCTCCACCGG
GTGGGCCGTGGAGTACGCTTCGTTCACGCTGCGCGCGCCGGCGCTCCGCCGCCTGTGCTGGTGGGAGCAGTTCGCGGGCC
GCGTCGCGATCGACGTCGGCATGCCGGGATCCGTCACGGAGGGCACGATCGAGTTCAAGTCCAACGGCGAGCTCGAGGAG
ATGTCCTGCCGCGAGATGAGGTTCTACAGGGCGCAGCTGATGCAGATGCTCCGCGGGATCCTCCCGGAACGTGCCGCCGG
CGAGGATCGCCGACGTCGCACGGCCTTCCATGACGGCGAGGACGACCACCGTGATGGACGACGGCGAGATGATCCCGGAG
GAGAGGCTCACCTGCGACCTTCGACGCCTCATCTCGTCGCGCCACGTCTGATTTCTGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis