Browse Element(s) Details


OsAffx.10371.1.S1_at

Description gb:NM_185384.1
DB_XREF= gi:34897853
GEN=OSJNBa0004I20.25
TID=OsAffx.10371.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0004I20.25 (OSJNBa0004I20.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0207011/11retrotransposon protein, putative, unclassified
LOC_Os02g211002/11retrotransposon protein, putative, unclassified
LOC_Os02g297601/11retrotransposon protein, putative, unclassified, expressed
LOC_Os07g456201/11retrotransposon protein, putative, unclassified, expressed
LOC_Os10g247001/11retrotransposon protein, putative, unclassified
LOC_Os11g028901/11retrotransposon protein, putative, unclassified
LOC_Os04g242601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02019Os.10689.1.S1_at11/116+579671..585449Cytochrome P450 88A1, putative, expressed
LOC_Os06g02028OsAffx.4692.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028Os.12721.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028OsAffx.4692.1.S1_x_at10/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02040Os.31022.1.S1_at11/116+592578..593131Late embryogenesis abundant group 1 family protein, expressed
LOC_Os06g02054OsAffx.10373.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.10373.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02070OsAffx.10371.1.S1_at11/116+605084..606675retrotransposon protein, putative, unclassified
LOC_Os06g02070OsAffx.20604.2.S1_at2/116+605084..606675retrotransposon protein, putative, unclassified
LOC_Os06g02080OsAffx.15226.1.S1_at8/116+612912..613862hypothetical protein
LOC_Os06g02090OsAffx.15227.1.S1_s_at11/116+615415..617865hAT family dimerisation domain containing protein
LOC_Os06g02090OsAffx.15227.2.S1_x_at11/116+615415..617865hAT family dimerisation domain containing protein
LOC_Os06g02100Os.49022.1.S1_at11/116+622552..625087F-box domain containing protein, expressed
LOC_Os06g02110Os.34056.1.S1_at11/116+625262..627762F-box domain containing protein, expressed
LOC_Os06g02110Os.55536.1.S1_at1/116+625262..627762F-box domain containing protein, expressed
LOC_Os06g02120Os.21199.1.S1_s_at11/116+628710..632784pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10371.1.S1_at--1045--5011Chr06:606076..606099 (24 bp)
GCAGGGTTTGATAGCTCAGATCAAG
LOC_Os06g02070
OsAffx.10371.1.S1_at--1151--9572Chr06:606138..606162 (25 bp)
TCTTGCACAGAAGGTGACCCTACAT
LOC_Os06g02070
OsAffx.10371.1.S1_at--1060--7752Chr10:12365670..12365689 (20 bp)
GGTGACCCTACATGAGCAAAGGTTT
LOC_Os10g24700
OsAffx.10371.1.S1_at--377--574Chr11:986132..986174 (25 bp)
ATCCTTATATGTATGATTCCGAAGT
LOC_Os11g02890
OsAffx.10371.1.S1_at--376--6471Chr06:606375..606399 (25 bp)
GATACAACTTCATGCTGGTCACATA
LOC_Os06g02070
OsAffx.10371.1.S1_at--538--8591Chr06:606390..606414 (25 bp)
TGGTCACATAATCCCATCGGCTGGG
LOC_Os06g02070
OsAffx.10371.1.S1_at--686--2871Chr06:606439..606463 (25 bp)
AAGTGGCATAACTCTGGTTCCCATG
LOC_Os06g02070
OsAffx.10371.1.S1_at--91--3791Chr06:606450..606474 (25 bp)
CTCTGGTTCCCATGCTACTAATGAT
LOC_Os06g02070
OsAffx.10371.1.S1_at--877--2852Chr06:606553..606577 (25 bp)
AAGGTAGATGGACATCCTTTCCCCG
LOC_Os06g02070
OsAffx.10371.1.S1_at--126--4973Chr06:606588..606612 (25 bp)
GCATACAGCTGGGAGAGCAGCCGAT
LOC_Os06g02070
OsAffx.10371.1.S1_at--277--5551Chr06:606617..606641 (25 bp)
GAAAGAATTCGGAGTTCTCAATTGA
LOC_Os06g02070
Target Sequence 
GCAGGGTTTGATAGCTCAGATCAAGGAGAAATTTTCATCTCAGGAATTTGAAAGCTTGTCTCATCTTGCACAGAAGGTGA
CCCTACATGAGCAAAGGTTTGTAGAGGCTAAGAAGAATTTCAAGAAGATCAATCATGTATATCCTTATATGTATGATTCC
GAAGTGGCAGCAGCTGAATGGGTGAGGAGCAAAAAGGTTGTGCCATGTCAATGGGTGAAGAGTTTTGGAAAAGAGGAAAG
GTATGACTTTGATATCACCAAGGCTGATAAGATTTTTGATTTGCTACTTCGGGAGAAACAGATACAACTTCATGCTGGTC
ACATAATCCCATCGGCTGGGGAGCTAGGGAAGAGAAAATATTGTAAGTGGCATAACTCTGGTTCCCATGCTACTAATGAT
TGCAAAGTCTTTAGGCAGCAGATCCAAGCAGCTATTGAGGGAGGGAAGATAAAATTTAATGATTCAAAGAAGCCGATGAA
GGTAGATGGACATCCTTTCCCCGTCAATATGGTGCATACAGCTGGGAGAGCAGCCGATGGGGGAAAGAATTCGGAGTTCT
CAATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis