Browse Element(s) Details

OsAffx.10373.1.S1_at

Description

tigr:9634.m04646
TID=OsAffx.10373.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47680	11/11	F-box domain containing protein
LOC_Os06g02054	11/11	F-box domain containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47620	Os.54966.1.S1_at	11/11	6	+	28830650..28836130	IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os06g47620	OsAffx.19893.1.S1_at	1/11	6	+	28830650..28836130	IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os06g47630	NA	NA	6	+	28845114..28845938	hypothetical protein
LOC_Os06g47640	Os.53014.1.S1_at	11/11	6	+	28846315..28847024	EF hand family protein, expressed
LOC_Os06g47660	Os.11189.2.S1_at	11/11	6	+	28850713..28856262	expressed protein
LOC_Os06g47660	OsAffx.28159.1.S1_at	10/11	6	+	28850713..28856262	expressed protein
LOC_Os06g47660	Os.52494.1.S1_at	1/11	6	+	28850713..28856262	expressed protein
LOC_Os06g47650	Os.11189.1.S1_at	11/11	6	+	28852113..28855938	Leucine Rich Repeat family protein, expressed
LOC_Os06g47670	OsAffx.28160.1.S1_x_at	4/11	6	+	28856674..28857261	hypothetical protein
LOC_Os06g47670	OsAffx.28160.1.S1_at	3/11	6	+	28856674..28857261	hypothetical protein
LOC_Os06g47680	OsAffx.10373.1.S1_x_at	11/11	6	+	28858090..28859394	F-box domain containing protein
LOC_Os06g47680	OsAffx.10373.1.S1_at	11/11	6	+	28858090..28859394	F-box domain containing protein
LOC_Os06g47690	OsAffx.15974.1.S1_at	9/11	6	+	28862877..28864000	hypothetical protein
LOC_Os06g47700	Os.11785.1.S1_at	11/11	6	+	28866479..28869892	Leucine Rich Repeat family protein, expressed
LOC_Os06g47700	Os.21111.1.S1_at	2/11	6	+	28866479..28869892	Leucine Rich Repeat family protein, expressed
LOC_Os06g47710	OsAffx.15975.1.S1_at	10/11	6	+	28871389..28872807	expressed protein
LOC_Os06g47720	NA	NA	6	+	28873840..28877070	Leucine Rich Repeat family protein
LOC_Os06g47730	Os.49985.1.S1_at	1/11	6	+	28880110..28886003	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47730	OsAffx.20303.1.S1_at	1/11	6	+	28880110..28886003	retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.10373.1.S1_at--312--731	2	Chr06:596879..596903 (25 bp)	GTGCTCCACCCAGGCTATCTCCAGG	LOC_Os06g02054
OsAffx.10373.1.S1_at--104--93	2	Chr06:596890..596914 (25 bp)	AGGCTATCTCCAGGACACCGCCTTC	LOC_Os06g02054
OsAffx.10373.1.S1_at--591--949	2	Chr06:596952..596976 (25 bp)	TCTCCGGCAGCATCGAGATCACGTC	LOC_Os06g02054
OsAffx.10373.1.S1_at--1044--183	2	Chr06:597077..597101 (25 bp)	ACGCTGCGCGTGTCCTGCCACGACG	LOC_Os06g02054
OsAffx.10373.1.S1_at--155--335	2	Chr06:597128..597152 (25 bp)	CACGAGATGCTCTGCGTGGAGACGC	LOC_Os06g02054
OsAffx.10373.1.S1_at--816--229	2	Chr06:597345..597369 (25 bp)	AAATGGAGGATTGCGACAAGTTGAT	LOC_Os06g02054
OsAffx.10373.1.S1_at--215--57	2	Chr06:597377..597401 (25 bp)	ATCCTGCAAGGGATCATGCCTGGCC	LOC_Os06g02054
OsAffx.10373.1.S1_at--524--927	2	Chr06:597378..597402 (25 bp)	TCCTGCAAGGGATCATGCCTGGCCG	LOC_Os06g02054
OsAffx.10373.1.S1_at--716--901	2	Chr06:597381..597405 (25 bp)	TGCAAGGGATCATGCCTGGCCGCTG	LOC_Os06g02054
OsAffx.10373.1.S1_at--253--59	2	Chr06:597392..597416 (25 bp)	ATGCCTGGCCGCTGGAAGTACGTCC	LOC_Os06g02054
OsAffx.10373.1.S1_at--29--449	2	Chr06:597394..597418 (25 bp)	GCCTGGCCGCTGGAAGTACGTCCAA	LOC_Os06g02054

Target Sequence

GTGCTCCACCCAGGCTATCTCCAGGACACCGCCTTCCCGTCGCTGGAGGAGCTNCANATCTCCGGCTGCACCCTCTCCGG
CAGCATCGAGATCACGTCNGCCACCATGCCGCGCCTCAAGCACCTCCGCATCGNCGANGTCAGCNTCNTNTCGCTCGGCA
CGGNGGCCGCNATCNCCGTCCTCGCCGANGAGCTGNCCACGCTGCGCGTGTCCTGCCACGACGGCGGCAAGCCCGACCCG
CCGNCCAGNCACGAGATGCTCTGCGTGGAGACGCNCTTCCGCGCCAGCTTCACCGAGTACTCGTNCTTCCGCCTGCGCGC
NCCCAAGCTGCGGGTNTTCGANTGGCGCTGCNGCTACGCCAAGGAGGTGCGCGTCGACGCCGTCGGCCGCCNNNTCTCCG
ACGTCGTNATCGAGCTGTTCGCCGGCAGGCTGCCTCGNTGCTACAACGAGGCCAAGAGGTTCCTGCAAATGGAGGATTGC
GACAAGTTGATGAANNACATCCTGCAAGGGATCATGCCTGGCCGCTGGAAGTACGTCCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis