Browse Element(s) Details


OsAffx.10526.1.S1_x_at

Description gb:NM_184580.1
DB_XREF= gi:34896249
GEN=OSJNBb0008D07.17
TID=OsAffx.10526.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0008D07.17 (OSJNBb0008D07.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g494201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49380Os.53339.1.S1_a_at11/117+29574894..29577416PWWP domain containing protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_x_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390Os.52331.1.A1_at8/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49400Os.12693.5.S1_x_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.1.S1_a_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.3.S1_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49410Os.52204.1.S1_at11/117+29588250..29592119Uncharacterized ACR, YagE family COG1723 containing protein, expressed
LOC_Os07g49420OsAffx.10526.1.S1_x_at1/117+29596249..29596843retrotransposon protein, putative, unclassified
LOC_Os07g49420OsAffx.10526.1.S1_at1/117+29596249..29596843retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.20729.1.S1_x_at5/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.21171.5.S1_x_at1/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.21171.4.S1_x_at1/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49440OsAffx.22063.1.S1_at1/117+29604103..29607708retrotransposon protein, putative, unclassified
LOC_Os07g49460Os.14563.1.S2_at11/117+29615012..29627527Two-component response regulator-like PRR37, putative, expressed
LOC_Os07g49460Os.14563.1.S1_at10/117+29615012..29627527Two-component response regulator-like PRR37, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10526.1.S1_x_at--636--5015Chr09:4245711..4245730 (20 bp)
GCAGGACCAGGCTGTAGGGATACAC
NONE
OsAffx.10526.1.S1_x_at--586--5851Chr01:16680886..16680910 (25 bp)
GACCAGGCTGTAGGGATACACGGCA
NONE
OsAffx.10526.1.S1_x_at--134--6471Chr01:16680876..16680896 (21 bp)
GATACACGGCAGGATGGGAAGATAT
NONE
OsAffx.10526.1.S1_x_at--635--6251NONE
GATGGGAAGATATCGCTCTACTGCA
NONE
OsAffx.10526.1.S1_x_at--811--7612Chr06:17547672..17547692 (21 bp)
GGGAAGATATCGCTCTACTGCACAC
NONE
OsAffx.10526.1.S1_x_at--730--2812Chr06:17547669..17547692 (24 bp)
AAGATATCGCTCTACTGCACACCCG
NONE
OsAffx.10526.1.S1_x_at--1091--4811Chr01:16680287..16680311 (25 bp)
GCTCTACTGCACACCCGGACAGAGA
NONE
OsAffx.10526.1.S1_x_at--925--5112Chr05:7893040..7893060 (21 bp)
GCACACCCGGACAGAGAGGACTTCA
NONE
OsAffx.10526.1.S1_x_at--1114--4252Chr05:7893038..7893058 (21 bp)
CCGGACAGAGAGGACTTCAGTGATA
NONE
OsAffx.10526.1.S1_x_at--1036--932Chr05:18125094..18125118 (25 bp)
AGGACTTCAGTGATAATGAGGGCTA
NONE
OsAffx.10526.1.S1_x_at--222--64718Chr12:11090631..11090650 (20 bp)
GATAATGAGGGCTATCACCACCTCT
NONE
Target Sequence 
GCAGGACCAGGCTGTAGGGATACACGGCAGGATGGGAAGATATCGCTCTACTGCACACCCGGACAGAGAGGACTTCAGTG
ATAATGAGGGCTATCACCACCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10526.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis