Browse Element(s) Details


OsAffx.10552.1.S1_x_at

Description gb:NM_184447.1
DB_XREF= gi:34895983
GEN=P0011G08.34
TID=OsAffx.10552.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0011G08.34 (P0011G08.34), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0645011/11Glycosyltransferase family 43 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06340Os.31008.1.S1_at11/111+3010717..3011553expressed protein
LOC_Os01g06350NANA1+3012647..3013219hypothetical protein
LOC_Os01g06360Os.38172.1.S1_x_at5/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06360Os.43567.1.S1_x_at2/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06370OsAffx.10555.1.S1_at11/111+3022632..3023192hypothetical protein
LOC_Os01g06380OsAffx.22769.1.S1_at11/111+3023615..3024883hypothetical protein
LOC_Os01g06390OsAffx.10553.1.S1_at11/111+3027396..3027965hypothetical protein
LOC_Os01g06400Os.30624.1.S1_at11/111+3028281..3029811expressed protein
LOC_Os01g06400Os.30624.2.S1_x_at8/111+3028281..3029811expressed protein
LOC_Os01g06410OsAffx.23135.1.S1_at11/111+3031030..3031590hypothetical protein
LOC_Os01g06420OsAffx.22993.1.S1_at11/111+3031861..3032493hypothetical protein
LOC_Os01g06430OsAffx.23042.1.S1_at11/111+3033492..3034091hypothetical protein
LOC_Os01g06440Os.31782.1.S1_at11/111+3034491..3035510expressed protein
LOC_Os01g06450OsAffx.10552.1.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06450OsAffx.10552.2.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06454Os.1460.2.S1_at10/111+3038282..3041148DNAJ protein, putative, expressed
LOC_Os01g06460Os.1460.1.S1_at11/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_x_at10/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_at1/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06470Os.174.1.S1_at11/111+3044234..3049067Importin alpha-2 subunit, putative, expressed
LOC_Os01g06480Os.56084.1.S1_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06480Os.56084.1.S1_x_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06490Os.24975.1.S1_a_at11/111+3051267..3054000Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g06500Os.32936.1.S1_at11/111+3055366..3056519lectin, putative, expressed
LOC_Os01g06510Os.46028.1.S1_at11/111+3057796..3063837arginyl-tRNA synthetase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10552.1.S1_x_at--763--3691Chr01:3036136..3036160 (25 bp)
CTATGGAGCAGAGCCGTCGTCCACT
LOC_Os01g06450
OsAffx.10552.1.S1_x_at--281--5911Chr01:3036286..3036310 (25 bp)
GAGCTCGACCTCTTGCTGATCGTCA
LOC_Os01g06450
OsAffx.10552.1.S1_x_at--1107--1851Chr01:3036335..3036359 (25 bp)
ACGACGACGGCATGTCCCAGGAGGC
LOC_Os01g06450
OsAffx.10552.1.S1_x_at--694--1671Chr01:3036398..3036422 (25 bp)
AGCCGCCGCTGCTGTGGATCGTCGT
LOC_Os01g06450
OsAffx.10552.1.S1_x_at--444--7971Chr01:3036413..3036437 (25 bp)
GGATCGTCGTCGGAGCCGAGAACAC
LOC_Os01g06450
OsAffx.10552.1.S1_x_at--89--7831Chr01:3036456..3036480 (25 bp)
GGTCAACGCGCTGCGTGGCACCAGA
LOC_Os01g06450
OsAffx.10552.1.S1_x_at--1033--8491Chr01:3036471..3036495 (25 bp)
TGGCACCAGAGTCATGTTCCGGCAT
LOC_Os01g06450
OsAffx.10552.1.S1_x_at--200--4491Chr01:3036529..3036553 (25 bp)
GCCGGCGACGAGGTAGACTACCAGA
LOC_Os01g06450
OsAffx.10552.1.S1_x_at--1136--1711Chr01:3036548..3036572 (25 bp)
ACCAGATGAACGTGGCGCTGTCTCA
LOC_Os01g06450
OsAffx.10552.1.S1_x_at--156--10691Chr01:3036643..3036667 (25 bp)
TTCCAACAGCTCAGGCAAACTCGGT
LOC_Os01g06450
OsAffx.10552.1.S1_x_at--456--931Chr01:3036655..3036964 (25 bp)
AGGCAAACTCGGTTGGTACTCAAAG
LOC_Os01g06450
Target Sequence 
CTATGGAGCAGAGCCGTCGTCCACTTCTCCCTCTGCTTCGCCATCGGCGTCTTCGCCGCGCTCTTGCCGCTCGCCGCCAC
CGGCGCCACGTCGATCGACAGCATCCGCGCCTCGTTCCGGCCAACGGTGGCGGCGACGCCTCCCGTTCCGGAGCTCGACC
TCTTGCTGATCGTCACCGTCACGCGGCCGGACGACGACGACGACGACGGCATGTCCCAGGAGGCGTCGCTGACGAGGCTC
GGCCACACGCTGCGTCTCGTCGAGCCGCCGCTGCTGTGGATCGTCGTCGGAGCCGAGAACACGACGGCGACGGCGAGGGC
GGTCAACGCGCTGCGTGGCACCAGAGTCATGTTCCGGCATCTCACCTACGCCGCCGAGAACTTCACCGGCCCCGCCGGCG
ACGAGGTAGACTACCAGATGAACGTGGCGCTGTCTCACATCCAGCTGCACCGGCTGCCCGGCGTCGTGCACTTCGCCGCC
GCTTCCAGCGTCTACGACCTTCGCTTCTTCCAACAGCTCAGGCAAACTCGGTTGGTACTCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10552.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis