Browse Element(s) Details


OsAffx.10553.1.S1_at

Description gb:NM_184441.1
DB_XREF= gi:34895971
GEN=P0011G08.28
TID=OsAffx.10553.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0011G08.28 (P0011G08.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0639011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06320Os.31652.1.S1_at11/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06320Os.31652.2.S1_x_at10/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06330NANA1+3007213..3008966hypothetical protein
LOC_Os01g06340Os.31008.1.S1_at11/111+3010717..3011553expressed protein
LOC_Os01g06350NANA1+3012647..3013219hypothetical protein
LOC_Os01g06360Os.38172.1.S1_x_at5/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06360Os.43567.1.S1_x_at2/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06370OsAffx.10555.1.S1_at11/111+3022632..3023192hypothetical protein
LOC_Os01g06380OsAffx.22769.1.S1_at11/111+3023615..3024883hypothetical protein
LOC_Os01g06390OsAffx.10553.1.S1_at11/111+3027396..3027965hypothetical protein
LOC_Os01g06400Os.30624.1.S1_at11/111+3028281..3029811expressed protein
LOC_Os01g06400Os.30624.2.S1_x_at8/111+3028281..3029811expressed protein
LOC_Os01g06410OsAffx.23135.1.S1_at11/111+3031030..3031590hypothetical protein
LOC_Os01g06420OsAffx.22993.1.S1_at11/111+3031861..3032493hypothetical protein
LOC_Os01g06430OsAffx.23042.1.S1_at11/111+3033492..3034091hypothetical protein
LOC_Os01g06440Os.31782.1.S1_at11/111+3034491..3035510expressed protein
LOC_Os01g06450OsAffx.10552.1.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06450OsAffx.10552.2.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06454Os.1460.2.S1_at10/111+3038282..3041148DNAJ protein, putative, expressed
LOC_Os01g06460Os.1460.1.S1_at11/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_x_at10/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_at1/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06470Os.174.1.S1_at11/111+3044234..3049067Importin alpha-2 subunit, putative, expressed
LOC_Os01g06480Os.56084.1.S1_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06480Os.56084.1.S1_x_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06490Os.24975.1.S1_a_at11/111+3051267..3054000Serine carboxypeptidase II precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10553.1.S1_at--929--1031Chr01:3027895..3027919 (25 bp)
AGGTGGACGACCTCTTCGTTGAGGC
LOC_Os01g06390
OsAffx.10553.1.S1_at--680--5611Chr01:3027854..3027878 (25 bp)
GACAACGCGCGTATTCACCTGGAGG
LOC_Os01g06390
OsAffx.10553.1.S1_at--883--10211Chr01:3027843..3027867 (25 bp)
TATTCACCTGGAGGCGCAGATGCTC
LOC_Os01g06390
OsAffx.10553.1.S1_at--689--2671Chr01:3027577..3027601 (25 bp)
AAGCGTGCGCCCGTATTGGCATGTG
LOC_Os01g06390
OsAffx.10553.1.S1_at--475--10851Chr01:3027562..3027586 (25 bp)
TTGGCATGTGCAGCGGACACCTGGA
LOC_Os01g06390
OsAffx.10553.1.S1_at--995--5631Chr01:3027547..3027571 (25 bp)
GACACCTGGAGACGATCAGCCTTCT
LOC_Os01g06390
OsAffx.10553.1.S1_at--1161--9111Chr01:3027523..3027547 (25 bp)
TGCTGGACCATGAGAATCTCCCTGG
LOC_Os01g06390
OsAffx.10553.1.S1_at--117--471Chr01:3027508..3027532 (25 bp)
ATCTCCCTGGCGTCAACGACTTGAT
LOC_Os01g06390
OsAffx.10553.1.S1_at--1001--1851Chr01:3027493..3027517 (25 bp)
ACGACTTGATCGAGAACGAGCGCCT
LOC_Os01g06390
OsAffx.10553.1.S1_at--1031--4251Chr01:3027471..3027495 (25 bp)
CCTGGATGCGGCTGTTGATGACCTC
LOC_Os01g06390
OsAffx.10553.1.S1_at--102--10771Chr01:3027457..3027481 (25 bp)
TTGATGACCTCCTGGCGGCGATTGG
LOC_Os01g06390
Target Sequence 
AGGTGGACGACCTCTTCGTTGAGGCGTTCGAGCTCCTCGTCGACAACGCGCGTATTCACCTGGAGGCGCAGATGCTCGTG
GGCGACGCGGCGGCGGCAGAGCGCGCCAGGATCCAGCTCGCGCAGGGCGCGCTCGAGGACGCGTCCGGCAAGCTCGCCTC
GGCGATGTCCCTCATGGTAGGGGCCAAGCTACTCGTGCTCCGCGGAGGAAGCCACGACCCCCTGATGCCTTACCACGACA
TCGGCCATCTTGGGGACGAGTACGCCGCGGAGAAGAACGCGTGCGCCAAGCTCCGTGGAGCCGAGAGGGAAGCCGAGGAA
GCGTGCGCCCGTATTGGCATGTGCAGCGGACACCTGGAGACGATCAGCCTTCTGCTGGACCATGAGAATCTCCCTGGCGT
CAACGACTTGATCGAGAACGAGCGCCTGGATGCGGCTGTTGATGACCTCCTGGCGGCGATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis