Browse Element(s) Details


OsAffx.10659.2.S1_at

Description tigr:9629.m02248
TID=OsAffx.10659.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2334010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23310OsAffx.23350.1.S1_at9/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.10665.3.S1_at2/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.12135.1.S1_x_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310Os.52303.1.S1_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.16350.1.S1_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.655.1.S1_x_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.10665.3.S1_x_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310Os.52303.1.S1_x_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.12135.1.S1_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23320Os.45173.1.S1_x_at2/111+13076933..13080432transposon protein, putative, unclassified
LOC_Os01g23320OsAffx.20733.1.A1_x_at1/111+13076933..13080432transposon protein, putative, unclassified
LOC_Os01g23330Os.52323.1.S1_at2/111+13084572..13091073retrotransposon protein, putative, unclassified
LOC_Os01g23330Os.47004.1.S1_at1/111+13084572..13091073retrotransposon protein, putative, unclassified
LOC_Os01g23340OsAffx.10659.2.S1_at10/111+13096564..13098440hypothetical protein
LOC_Os01g23340OsAffx.1436.1.S1_x_at2/111+13096564..13098440hypothetical protein
LOC_Os01g23350OsAffx.2062.1.S1_at11/111+13112523..13113680hypothetical protein
LOC_Os01g23360OsAffx.23351.2.S1_at11/111+13115904..13118630hypothetical protein
LOC_Os01g23360OsAffx.23351.2.S1_x_at11/111+13115904..13118630hypothetical protein
LOC_Os01g23370Os.34746.2.S1_x_at11/111+13120329..13123545hypothetical protein
LOC_Os01g23370Os.34746.2.S1_at11/111+13120329..13123545hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10659.2.S1_at--558--5631NONE
GACACCAATCAAAGACGGCGATGGA
NONE
OsAffx.10659.2.S1_at--1156--932Chr10:972172..972479 (25 bp)
AGGAAGACGTCCTTGAGCGGCAGCA
NONE
OsAffx.10659.2.S1_at--173--2771Chr01:13096848..13096872 (25 bp)
AAGACGTCCTTGAGCGGCAGCATAA
LOC_Os01g23340
OsAffx.10659.2.S1_at--39--4975Chr08:7071501..7071553 (25 bp)
GCATAATAGGCCAGTCGTGAAAGCA
NONE
OsAffx.10659.2.S1_at--871--8952Chr11:13293226..13293245 (20 bp)
TGAAAGCAAAGACACCATGGACGGT
NONE
OsAffx.10659.2.S1_at--1142--1711Chr01:13096799..13096823 (25 bp)
ACCATGGACGGTGCGGCAAAGGCAA
LOC_Os01g23340
OsAffx.10659.2.S1_at--337--1851Chr01:13096767..13096791 (25 bp)
ACGAAGACGATGATGCCTATCAACG
LOC_Os01g23340
OsAffx.10659.2.S1_at--192--591Chr01:13096652..13096779 (25 bp)
ATGCCTATCAACGACGCCGTGTCAG
LOC_Os01g23340
OsAffx.10659.2.S1_at--816--371Chr01:13096646..13096773 (25 bp)
ATCAACGACGCCGTGTCAGTGAAAT
LOC_Os01g23340
OsAffx.10659.2.S1_at--389--5811Chr01:13096640..13096661 (22 bp)
GACGCCGTGTCAGTGAAATAATCAA
LOC_Os01g23340
OsAffx.10659.2.S1_at--865--651Chr01:13096605..13096629 (25 bp)
ATGAAACAGTCAGCCATGAAGATGA
LOC_Os01g23340
Target Sequence 
GACACCAATCAAAGACGGCGATGGAAGAAGTTGAATGATGATGAAAAGGAAGACGTCCTTGAGCGGCAGCATAATAGGCC
AGTCGTGAAAGCAAAGACACCATGGACGGTGCGGCAAAGGCAAGCCAAAGACGAAGACGATGATGCCTATCAACGACGCC
GTGTCAGTGAAATAATCAATCAGCAACAGATGAAACAGTCAGCCATGAAGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10659.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis