Browse Element(s) Details


OsAffx.16350.1.S1_at

Description tigr:9635.m02055
TID=OsAffx.16350.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2084010/11hypothetical protein
LOC_Os02g259901/11hypothetical protein
LOC_Os01g233101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20790NANA7+12027005..12027561transposon protein, putative, unclassified
LOC_Os07g20800NANA7+12030301..12030773retrotransposon protein, putative, unclassified
LOC_Os07g20810OsAffx.22947.2.S1_x_at5/117+12033319..12037054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20810OsAffx.22947.1.S1_x_at4/117+12033319..12037054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20810OsAffx.22947.3.S1_x_at3/117+12033319..12037054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20810Os.52609.1.S1_at1/117+12033319..12037054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20820NANA7+12042432..12042917Transposable element protein, putative, Retrotrans_gag
LOC_Os07g20830OsAffx.22240.1.S1_at2/117+12045670..12049104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20830OsAffx.22240.1.S1_x_at2/117+12045670..12049104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20830Os.47004.1.S1_at1/117+12045670..12049104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20840OsAffx.16350.1.S1_at10/117+12052285..12054012hypothetical protein
LOC_Os07g20850OsAffx.8201.1.S1_at2/117+12059502..12061560retrotransposon protein, putative, unclassified
LOC_Os07g20850OsAffx.8201.1.S1_x_at2/117+12059502..12061560retrotransposon protein, putative, unclassified
LOC_Os07g20860OsAffx.16351.1.S1_at11/117+12062394..12065483hypothetical protein
LOC_Os07g20860OsAffx.3813.1.S1_at1/117+12062394..12065483hypothetical protein
LOC_Os07g20870NANA7+12071527..12072173retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20880OsAffx.31892.2.S1_x_at1/117+12073787..12081014retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16350.1.S1_at--440--1931Chr07:12053803..12053944 (25 bp)
ACGGAGCGGCCTGCACGACGATGTT
LOC_Os07g20840
OsAffx.16350.1.S1_at--398--9031NONE
TGCACGACGATGTTGGCGGTACAGA
NONE
OsAffx.16350.1.S1_at--819--9853Chr03:18238205..18238226 (22 bp)
TACAGAATTGGCATTTAACAGCTGC
NONE
OsAffx.16350.1.S1_at--327--10275Chr05:12243058..12243078 (21 bp)
TTTGCTCATCCCTGAGTAAAGTCCT
NONE
OsAffx.16350.1.S1_at--557--92927Chr10:9303047..9303207 (25 bp)
TCCCTGAGTAAAGTCCTTCTTGCTT
NONE
OsAffx.16350.1.S1_at--65--4914Chr10:9303204..9303228 (25 bp)
GCTTCTCTGCCAGACTCATGGGATT
NONE
OsAffx.16350.1.S1_at--944--5692Chr07:12052398..12052422 (25 bp)
GACTCATGGGATTTTTATAGATTTT
LOC_Os07g20840
OsAffx.16350.1.S1_at--906--10511Chr07:12052375..12052399 (25 bp)
TTCACAAATCAGCATTTCTCCTCCT
LOC_Os07g20840
OsAffx.16350.1.S1_at--773--192Chr07:12052362..12052386 (25 bp)
ATTTCTCCTCCTATTGACTTTCTCT
LOC_Os07g20840
OsAffx.16350.1.S1_at--995--51Chr07:12052350..12052374 (25 bp)
ATTGACTTTCTCTCATGTCTCTCAA
LOC_Os07g20840
OsAffx.16350.1.S1_at--162--10591Chr07:12052343..12052367 (25 bp)
TTCTCTCATGTCTCTCAAGGATGTA
LOC_Os07g20840
Target Sequence 
ACGGAGCGGCCTGCACGACGATGTTGGCGGTACAGAATTGGCATTTAACAGCTGCCAACAAAACCCCCCACACTTAGCCC
TTTGCTCATCCCTGAGTAAAGTCCTTCTTGCTTCTCTGCCAGACTCATGGGATTTTTATAGATTTTCACAAATCAGCATT
TCTCCTCCTATTGACTTTCTCTCATGTCTCTCAAGGATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis