Browse Element(s) Details


OsAffx.16351.1.S1_at

Description tigr:9635.m02057
TID=OsAffx.16351.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2086011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20820NANA7+12042432..12042917Transposable element protein, putative, Retrotrans_gag
LOC_Os07g20830OsAffx.22240.1.S1_at2/117+12045670..12049104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20830OsAffx.22240.1.S1_x_at2/117+12045670..12049104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20830Os.47004.1.S1_at1/117+12045670..12049104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20840OsAffx.16350.1.S1_at10/117+12052285..12054012hypothetical protein
LOC_Os07g20850OsAffx.8201.1.S1_at2/117+12059502..12061560retrotransposon protein, putative, unclassified
LOC_Os07g20850OsAffx.8201.1.S1_x_at2/117+12059502..12061560retrotransposon protein, putative, unclassified
LOC_Os07g20860OsAffx.16351.1.S1_at11/117+12062394..12065483hypothetical protein
LOC_Os07g20860OsAffx.3813.1.S1_at1/117+12062394..12065483hypothetical protein
LOC_Os07g20870NANA7+12071527..12072173retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20880OsAffx.31892.2.S1_x_at1/117+12073787..12081014retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20890OsAffx.25367.1.S1_at1/117+12082751..12089145retrotransposon, putative, centromere-specific
LOC_Os07g20890OsAffx.21269.1.S1_x_at1/117+12082751..12089145retrotransposon, putative, centromere-specific
LOC_Os07g20890OsAffx.26189.1.S1_at1/117+12082751..12089145retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16351.1.S1_at--601--5731Chr07:12062937..12062961 (25 bp)
GACTGTAAGCAAAGCTCTGGCACCT
LOC_Os07g20860
OsAffx.16351.1.S1_at--415--4511Chr07:12062909..12062933 (25 bp)
GCCGATCATGTGAAAACAAACCTTT
LOC_Os07g20860
OsAffx.16351.1.S1_at--931--9691Chr07:12062876..12062900 (25 bp)
TCACATTGGCTTGAGGGTTCCTTAG
LOC_Os07g20860
OsAffx.16351.1.S1_at--728--8891Chr07:12062865..12062889 (25 bp)
TGAGGGTTCCTTAGAAACCGTAGTG
LOC_Os07g20860
OsAffx.16351.1.S1_at--859--9991Chr07:12062779..12062803 (25 bp)
TAGCCGATATCCTTAACCCAGCAGC
LOC_Os07g20860
OsAffx.16351.1.S1_at--818--5151Chr07:12062715..12062739 (25 bp)
GCAACGGATTGCTGATCGGTGTGAA
LOC_Os07g20860
OsAffx.16351.1.S1_at--783--1471Chr07:12062676..12062700 (25 bp)
AGCAATCATCCAAGCTAACCGGGCT
LOC_Os07g20860
OsAffx.16351.1.S1_at--421--6211Chr07:12062615..12062639 (25 bp)
GAGGCTGGTCCAAGCTCCACACAAG
LOC_Os07g20860
OsAffx.16351.1.S1_at--625--5951Chr07:12062540..12062564 (25 bp)
GAGCAATGCGATGCTCAAATTGCAA
LOC_Os07g20860
OsAffx.16351.1.S1_at--460--8231Chr07:12062461..12062485 (25 bp)
GGCTAAAATCCTCTATCAAACACTT
LOC_Os07g20860
OsAffx.16351.1.S1_at--942--10451Chr07:12062438..12062462 (25 bp)
TTAGCCGAACTGACGAAATCTCTGA
LOC_Os07g20860
Target Sequence 
GACTGTAAGCAAAGCTCTGGCACCTCTAGCCGATCATGTGAAAACAAACCTTTTAGATATCTCACATTGGCTTGAGGGTT
CCTTAGAAACCGTAGTGGTTAGCTGTGGATCAATCAGAGATAGATTTCATGAAATCCAAGATCAAATTCCAGATGAGCTA
GCCGATATCCTTAACCCAGCAGCATATTTTGAGCAACATCGGTTCAAACGGGAGAAAGCAAAGCAACGGATTGCTGATCG
GTGTGAAAGGAAAGATCTTGAAGCAATCATCCAAGCTAACCGGGCTTCCATCAATGAAGAAAAAGCAAAACTTGATGAAT
TGGAGGCTGGTCCAAGCTCCACACAAGCCAACATAGATCGGCTGAATGCTCGGAAGATAGAACTCCTAGCCGAGTTGGAG
CAATGCGATGCTCAAATTGCAATTGAAGAACAGAATCTTGCCGATCTGCCCAAAGCTACTGAAGATCAGAGATCAAGGCT
AAAATCCTCTATCAAACACTTAGCCGAACTGACGAAATCTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis