Browse Element(s) Details


OsAffx.23350.1.S1_at

Description tigr:9629.m02245
TID=OsAffx.23350.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g233109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23230OsAffx.31869.4.S1_x_at10/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23230OsAffx.31869.4.S1_at9/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23230OsAffx.31869.3.S1_x_at8/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23230OsAffx.31869.3.S1_s_at4/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23230OsAffx.31869.3.S1_at3/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23230OsAffx.31869.5.S1_x_at2/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23239NANA1+13048865..13049167hypothetical protein
LOC_Os01g23248Os.27541.1.A1_at1/111+13053769..13054173NA
LOC_Os01g23260OsAffx.11167.1.S1_at7/111+13056099..13056853hypothetical protein
LOC_Os01g23260Os.54691.1.S1_x_at1/111+13056099..13056853hypothetical protein
LOC_Os01g23270NANA1+13059081..13061516retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23280NANA1+13062363..13063382retrotransposon protein, putative, unclassified
LOC_Os01g23290NANA1+13063964..13066235retrotransposon protein, putative, unclassified
LOC_Os01g23300NANA1+13068435..13069170transposon protein, putative, unclassified
LOC_Os01g23310OsAffx.23350.1.S1_at9/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.10665.3.S1_at2/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.12135.1.S1_x_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310Os.52303.1.S1_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.16350.1.S1_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.655.1.S1_x_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.10665.3.S1_x_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310Os.52303.1.S1_x_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.12135.1.S1_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23320Os.45173.1.S1_x_at2/111+13076933..13080432transposon protein, putative, unclassified
LOC_Os01g23320OsAffx.20733.1.A1_x_at1/111+13076933..13080432transposon protein, putative, unclassified
LOC_Os01g23330Os.52323.1.S1_at2/111+13084572..13091073retrotransposon protein, putative, unclassified
LOC_Os01g23330Os.47004.1.S1_at1/111+13084572..13091073retrotransposon protein, putative, unclassified
LOC_Os01g23340OsAffx.10659.2.S1_at10/111+13096564..13098440hypothetical protein
LOC_Os01g23340OsAffx.1436.1.S1_x_at2/111+13096564..13098440hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23350.1.S1_at--430--5111Chr01:13072757..13072781 (25 bp)
GCACATGCCCTGTATCTTCACCATG
LOC_Os01g23310
OsAffx.23350.1.S1_at--649--4331Chr01:13072777..13072801 (25 bp)
CCATGAAGACGAGTTGCTAGGCTGC
LOC_Os01g23310
OsAffx.23350.1.S1_at--992--2751Chr01:13072802..13072826 (25 bp)
AAGACTACTGCTCGTGACTTCCTGA
LOC_Os01g23310
OsAffx.23350.1.S1_at--368--3991NONE
CGTGACTTCCTGAGACAAAATACCT
NONE
OsAffx.23350.1.S1_at--64--311Chr01:13073756..13073776 (21 bp)
ATACCTCTAAACATATCCCAGTGCA
LOC_Os01g23310
OsAffx.23350.1.S1_at--467--271NONE
ATATGTCAGACGTTGGCGGTATAGA
NONE
OsAffx.23350.1.S1_at--700--6431Chr01:13076583..13076607 (25 bp)
GATAAAGGACGTGCTTACCTGCTTA
LOC_Os01g23310
OsAffx.23350.1.S1_at--821--4893Chr01:13076595..13076619 (25 bp)
GCTTACCTGCTTACCTGTGAAAACT
LOC_Os01g23310
OsAffx.23350.1.S1_at--1044--3679Chr06:14659019..14659041 (23 bp)
CTTTCTGCAGAGTTCAGTGCTTCCA
NONE
OsAffx.23350.1.S1_at--915--6512Chr10:8436836..8437312 (25 bp)
GATATTTCAACAATTCTCAGGGCAT
NONE
OsAffx.23350.1.S1_at--735--3151Chr01:13076725..13076749 (25 bp)
AATTCTCAGGGCATATGCACGTTAG
LOC_Os01g23310
Target Sequence 
GCACATGCCCTGTATCTTCACCATGAAGACGAGTTGCTAGGCTGCAAGACTACTGCTCGTGACTTCCTGAGACAAAATAC
CTCTAAACATATCCCAGTGCAAGCACTAGAAGATAATGAGATCGAACTAGAGCAGCAAGATGATGGCTCCTTGAATATGT
CAGACGTTGGCGGTATAGAATCGACATTTAACAGCCGCCAACAAAACCCCCCACACTTAGCACTTTGCTCGTCCCTGAGT
AAAGCTCTAGTACTATACCATGGTGGAGATATACAGATAAAGGACGTGCTTACCTGCTTACCTGTGAAAACTGAGAGGGA
TAGGGGCCAGCACTGGTTCGGCCGAACCACTCTGGTGCCTGATCCCTCTGCAACTTTCTGCAGAGTTCAGTGCTTCCAGG
TGTTCAGATATTTCAACAATTCTCAGGGCATATGCACGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis