Browse Element(s) Details


OsAffx.11167.1.S1_at

Description tigr:9629.m02240
TID=OsAffx.11167.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g232607/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23210OsAffx.1772.1.S1_at11/111+13030899..13036379retrotransposon protein, putative, unclassified
LOC_Os01g23210OsAffx.32036.1.S1_at1/111+13030899..13036379retrotransposon protein, putative, unclassified
LOC_Os01g23210Os.10731.2.A1_at1/111+13030899..13036379retrotransposon protein, putative, unclassified
LOC_Os01g23219NANA1+13044374..13044676hypothetical protein
LOC_Os01g23230OsAffx.31869.4.S1_x_at10/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23230OsAffx.31869.4.S1_at9/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23230OsAffx.31869.3.S1_x_at8/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23230OsAffx.31869.3.S1_s_at4/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23230OsAffx.31869.3.S1_at3/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23230OsAffx.31869.5.S1_x_at2/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23239NANA1+13048865..13049167hypothetical protein
LOC_Os01g23248Os.27541.1.A1_at1/111+13053769..13054173NA
LOC_Os01g23260OsAffx.11167.1.S1_at7/111+13056099..13056853hypothetical protein
LOC_Os01g23260Os.54691.1.S1_x_at1/111+13056099..13056853hypothetical protein
LOC_Os01g23270NANA1+13059081..13061516retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23280NANA1+13062363..13063382retrotransposon protein, putative, unclassified
LOC_Os01g23290NANA1+13063964..13066235retrotransposon protein, putative, unclassified
LOC_Os01g23300NANA1+13068435..13069170transposon protein, putative, unclassified
LOC_Os01g23310OsAffx.23350.1.S1_at9/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.10665.3.S1_at2/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.12135.1.S1_x_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310Os.52303.1.S1_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.16350.1.S1_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.655.1.S1_x_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.10665.3.S1_x_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310Os.52303.1.S1_x_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23310OsAffx.12135.1.S1_at1/111+13072721..13076787hypothetical protein
LOC_Os01g23320Os.45173.1.S1_x_at2/111+13076933..13080432transposon protein, putative, unclassified
LOC_Os01g23320OsAffx.20733.1.A1_x_at1/111+13076933..13080432transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11167.1.S1_at--259--1951Chr01:13056751..13056775 (25 bp)
ACTGGCCTCGTGGTGATTTTGCACA
LOC_Os01g23260
OsAffx.11167.1.S1_at--907--3911Chr01:13056750..13056774 (25 bp)
CTGGCCTCGTGGTGATTTTGCACAA
LOC_Os01g23260
OsAffx.11167.1.S1_at--880--8451Chr01:13056749..13056773 (25 bp)
TGGCCTCGTGGTGATTTTGCACAAA
LOC_Os01g23260
OsAffx.11167.1.S1_at--183--3991Chr01:13056743..13056767 (25 bp)
CGTGGTGATTTTGCACAAAATTCAG
LOC_Os01g23260
OsAffx.11167.1.S1_at--279--3271Chr01:13056728..13056752 (25 bp)
CAAAATTCAGATCGGACTTTTGTGG
LOC_Os01g23260
OsAffx.11167.1.S1_at--444--8131Chr01:13056719..13056739 (21 bp)
GGACTTTTGTGGAGCGACAAGCAAT
LOC_Os01g23260
OsAffx.11167.1.S1_at--877--5691Chr01:13056719..13056738 (20 bp)
GACTTTTGTGGAGCGACAAGCAATA
LOC_Os01g23260
OsAffx.11167.1.S1_at--571--3671NONE
CTTTTGTGGAGCGACAAGCAATACT
NONE
OsAffx.11167.1.S1_at--325--10251NONE
TTTGTGGAGCGACAAGCAATACTAT
NONE
OsAffx.11167.1.S1_at--1005--7511NONE
GTGGAGCGACAAGCAATACTATGAA
NONE
OsAffx.11167.1.S1_at--1073--8531NONE
TGGAGCGACAAGCAATACTATGAAG
NONE
Target Sequence 
ACTGGCCTCGTGGTGATTTTGCACAAAATTCAGATCGGACTTTTGTGGAGCGACAAGCAATACTATGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis