Browse Element(s) Details


OsAffx.10886.1.S1_at

Description tigr:9629.m00210
TID=OsAffx.10886.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0298011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02950OsAffx.23093.1.S1_at11/111+1094382..1095744hypothetical protein
LOC_Os01g02960Os.32335.1.S1_at11/111+1100584..1103692expressed protein
LOC_Os01g02960OsAffx.23093.2.S1_at1/111+1100584..1103692expressed protein
LOC_Os01g02960Os.32335.2.S1_x_at1/111+1100584..1103692expressed protein
LOC_Os01g02970NANA1+1109235..1110135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02980OsAffx.10886.1.S1_at11/111+1117121..1123551hypothetical protein
LOC_Os01g02980OsAffx.10886.2.S1_at9/111+1117121..1123551hypothetical protein
LOC_Os01g02990OsAffx.22815.2.S1_at11/111+1134043..1134426hypothetical protein
LOC_Os01g02999NANA1+1135682..1136375NA
LOC_Os01g03010OsAffx.10819.1.S1_at10/111+1140359..1141299hypothetical protein
LOC_Os01g03020Os.1070.1.S1_at11/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03020OsAffx.30685.1.S1_x_at1/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10886.1.S1_at--404--6771Chr01:1122253..1122277 (25 bp)
GTTAACTTAGATCCAGCTCTTCAAA
LOC_Os01g02980
OsAffx.10886.1.S1_at--448--3191Chr01:1122298..1122322 (25 bp)
CAATATGCACGGTTTTTCTCGGATT
LOC_Os01g02980
OsAffx.10886.1.S1_at--648--9511Chr01:1122314..1122338 (25 bp)
TCTCGGATTTTTCCTCATACAATAT
LOC_Os01g02980
OsAffx.10886.1.S1_at--1085--2971Chr01:1122691..1122715 (25 bp)
AATGTGGTACATAGACACCCTGCAC
LOC_Os01g02980
OsAffx.10886.1.S1_at--737--4951Chr01:1122745..1122769 (25 bp)
GCATATGCTTCACACGCTAGTTTAA
LOC_Os01g02980
OsAffx.10886.1.S1_at--451--9071Chr01:1122795..1122819 (25 bp)
TGCTTGGAAAGGTTCTGCGCAGCTT
LOC_Os01g02980
OsAffx.10886.1.S1_at--381--4591Chr01:1122811..1122835 (25 bp)
GCGCAGCTTGTTCCTGAACTCAATA
LOC_Os01g02980
OsAffx.10886.1.S1_at--744--6731Chr01:1122838..1122862 (25 bp)
GTTCTTATCTATCAACCATCCGGGA
LOC_Os01g02980
OsAffx.10886.1.S1_at--507--2311Chr01:1122904..1122928 (25 bp)
AAAGGTTGTCTTCATTTTGCCAATA
LOC_Os01g02980
OsAffx.10886.1.S1_at--75--8271Chr01:1123053..1123077 (25 bp)
GGCAGCATTTGCTCTACACATGAAA
LOC_Os01g02980
OsAffx.10886.1.S1_at--509--3471Chr01:1123099..1123123 (25 bp)
CAGGGACTAGCTGAACTTGCTGATC
LOC_Os01g02980
Target Sequence 
GTTAACTTAGATCCAGCTCTTCAAAATGCTGGAATCCAGGCATTCCAATATGCACGGTTTTTCTCGGATTTTTCCTCATA
CAATATATTCAGAAGGATGAAACAATTGATGATTTTAGACAATGTGGTACATAGACACCCTGCACATCTTCAGGCTAATA
TAAAAGCTATGGCAGCATATGCTTCACACGCTAGTTTAAGAGCTAGTATGGGACCATATGCATATGCTTGGAAAGGTTCT
GCGCAGCTTGTTCCTGAACTCAATAATGTTCTTATCTATCAACCATCCGGGAAACCATTACAATGGAAAAATCCCTTATA
TACTGATAATGCAAAAGGTTGTCTTCATTTTGCCAATAATTTTTTGAAGCATGCAAGAAACAGGTTCCCAGAAGAACAAA
TTGAGGCAGCATTTGCTCTACACATGAAAAATTTCCTGCCAAAGATATTACAGGGACTAGCTGAACTTGCTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis