Browse Element(s) Details


OsAffx.10893.1.S1_x_at

Description gb:NM_184176.1
DB_XREF= gi:34895443
GEN=P0037C04.16
TID=OsAffx.10893.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative serinethreonine-specific receptor protein kinase (P0037C04.16), mRNA.
PROD=putative serinethreonine-specific receptorprotein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0337011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03280OsAffx.24595.2.S1_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03280OsAffx.24595.1.S1_s_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03280OsAffx.24595.2.S1_x_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03290OsAffx.22807.1.S1_at11/111+1330554..1331541Seven in absentia protein family protein
LOC_Os01g03290OsAffx.23096.1.S1_s_at1/111+1330554..1331541Seven in absentia protein family protein
LOC_Os01g03300OsAffx.23097.1.S1_at11/111+1332666..1334209Seven in absentia protein family protein
LOC_Os01g03310Os.32459.1.S1_at11/111+1335041..1335900Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03310Os.32459.2.S1_x_at5/111+1335041..1335900Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320Os.12713.1.S2_a_at11/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320Os.32459.2.S1_x_at6/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320OsAffx.4805.1.S1_at1/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.19472.1.S1_at10/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.32459.2.S1_x_at1/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.4653.1.S1_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.37729.1.S1_s_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03350NANA1+1347622..1347909hypothetical protein
LOC_Os01g03360Os.37729.1.S1_s_at11/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03360Os.32459.2.S1_x_at1/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03370OsAffx.10893.1.S1_x_at11/111+1353403..1358059Protein kinase domain containing protein
LOC_Os01g03370OsAffx.10893.2.S1_at11/111+1353403..1358059Protein kinase domain containing protein
LOC_Os01g03380OsAffx.22805.1.S1_at7/111+1360512..1361069Bowman-Birk type bran trypsin inhibitor precursor, putative
LOC_Os01g03390Os.22594.1.S1_at11/111+1362345..1363244Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03390Os.32459.2.S1_x_at1/111+1362345..1363244Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03400OsAffx.10894.1.S1_at11/111+1365693..1366594Ubiquitin ligase sina, putative
LOC_Os01g03410Os.17213.1.S1_x_at1/111+1369765..1370940hypothetical protein
LOC_Os01g03410OsAffx.25095.5.S1_x_at1/111+1369765..1370940hypothetical protein
LOC_Os01g03420OsAffx.10592.1.S1_at10/111+1371971..1374044Seven in absentia protein family protein
LOC_Os01g03429OsAffx.23100.1.S1_x_at11/111+1376493..1378945hypothetical protein
LOC_Os01g03429OsAffx.23100.1.S1_at11/111+1376493..1378945hypothetical protein
LOC_Os01g03440OsAffx.11270.1.S1_at8/111+1380448..1381886hypothetical protein
LOC_Os01g03440OsAffx.11270.1.S1_x_at7/111+1380448..1381886hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10893.1.S1_x_at--239--4931Chr01:1354059..1354083 (25 bp)
GCTTGTCCAAGGCATCCAGCTATGA
LOC_Os01g03370
OsAffx.10893.1.S1_x_at--23--4811Chr01:1354009..1354033 (25 bp)
GCTCTCGTTGGCACACTTGGATATG
LOC_Os01g03370
OsAffx.10893.1.S1_x_at--204--6511Chr01:1353896..1354014 (25 bp)
GATATGTCGATCCAGAGTACCAGAT
LOC_Os01g03370
OsAffx.10893.1.S1_x_at--1112--8651Chr01:1353844..1353868 (25 bp)
TGTCTATAGCTTTGGCGTCGTCTTA
LOC_Os01g03370
OsAffx.10893.1.S1_x_at--541--8371Chr01:1353831..1353855 (25 bp)
GGCGTCGTCTTATTGGAGCTGGTCA
LOC_Os01g03370
OsAffx.10893.1.S1_x_at--89--7611Chr01:1353804..1353828 (25 bp)
GGGAAGCCGGCTATCTTGCATGAAC
LOC_Os01g03370
OsAffx.10893.1.S1_x_at--1070--8811Chr01:1353718..1353742 (25 bp)
TGTTGTGGACACATGCATGCCTAGT
LOC_Os01g03370
OsAffx.10893.1.S1_x_at--344--2931Chr01:1353669..1353693 (25 bp)
AAGGCTATGGACATTGCGTTCACGT
LOC_Os01g03370
OsAffx.10893.1.S1_x_at--641--7331Chr01:1353646..1353670 (25 bp)
GTGCACTGCACAAGCATCGACACAA
LOC_Os01g03370
OsAffx.10893.1.S1_x_at--726--651Chr01:1353566..1353590 (25 bp)
ATGCACGTTGTGCTATTGGCGATGC
LOC_Os01g03370
OsAffx.10893.1.S1_x_at--854--8471Chr01:1353550..1353574 (25 bp)
TGGCGATGCACACAACGAGTTCTAC
LOC_Os01g03370
Target Sequence 
GCTTGTCCAAGGCATCCAGCTATGACAACATCACCCATGTATCCACGAACGCTCTCGTTGGCACACTTGGATATGTCGAT
CCAGAGTACCAGATGACAATGCAAGCAACAACAAAGAGCGATGTCTATAGCTTTGGCGTCGTCTTATTGGAGCTGGTCAC
TGGGAAGCCGGCTATCTTGCATGAACCAAACCCCATCAGCGTCATCCACTGGACACGACAACGTCTAGCACGGGGTAACA
TCGAGGATGTTGTGGACACATGCATGCCTAGTGATTATGATGTAAATGGTGTGTGGAAGGCTATGGACATTGCGTTCACG
TGCACTGCACAAGCATCGACACAACGACTCACTATGACTGAAGTGGTGATGCAGTTGCAAGAGTGTCTCGAGCTTGAGGA
TGCACGTTGTGCTATTGGCGATGCACACAACGAGTTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10893.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis