Browse Element(s) Details


OsAffx.10893.2.S1_at

Description tigr:9629.m00252
TID=OsAffx.10893.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0337011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03280OsAffx.24595.2.S1_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03280OsAffx.24595.1.S1_s_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03280OsAffx.24595.2.S1_x_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03290OsAffx.22807.1.S1_at11/111+1330554..1331541Seven in absentia protein family protein
LOC_Os01g03290OsAffx.23096.1.S1_s_at1/111+1330554..1331541Seven in absentia protein family protein
LOC_Os01g03300OsAffx.23097.1.S1_at11/111+1332666..1334209Seven in absentia protein family protein
LOC_Os01g03310Os.32459.1.S1_at11/111+1335041..1335900Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03310Os.32459.2.S1_x_at5/111+1335041..1335900Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320Os.12713.1.S2_a_at11/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320Os.32459.2.S1_x_at6/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320OsAffx.4805.1.S1_at1/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.19472.1.S1_at10/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.32459.2.S1_x_at1/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.4653.1.S1_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.37729.1.S1_s_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03350NANA1+1347622..1347909hypothetical protein
LOC_Os01g03360Os.37729.1.S1_s_at11/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03360Os.32459.2.S1_x_at1/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03370OsAffx.10893.1.S1_x_at11/111+1353403..1358059Protein kinase domain containing protein
LOC_Os01g03370OsAffx.10893.2.S1_at11/111+1353403..1358059Protein kinase domain containing protein
LOC_Os01g03380OsAffx.22805.1.S1_at7/111+1360512..1361069Bowman-Birk type bran trypsin inhibitor precursor, putative
LOC_Os01g03390Os.22594.1.S1_at11/111+1362345..1363244Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03390Os.32459.2.S1_x_at1/111+1362345..1363244Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03400OsAffx.10894.1.S1_at11/111+1365693..1366594Ubiquitin ligase sina, putative
LOC_Os01g03410Os.17213.1.S1_x_at1/111+1369765..1370940hypothetical protein
LOC_Os01g03410OsAffx.25095.5.S1_x_at1/111+1369765..1370940hypothetical protein
LOC_Os01g03420OsAffx.10592.1.S1_at10/111+1371971..1374044Seven in absentia protein family protein
LOC_Os01g03429OsAffx.23100.1.S1_x_at11/111+1376493..1378945hypothetical protein
LOC_Os01g03429OsAffx.23100.1.S1_at11/111+1376493..1378945hypothetical protein
LOC_Os01g03440OsAffx.11270.1.S1_at8/111+1380448..1381886hypothetical protein
LOC_Os01g03440OsAffx.11270.1.S1_x_at7/111+1380448..1381886hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10893.2.S1_at--137--4251Chr01:1353475..1353499 (25 bp)
CCGGTCCAACGATGTGAGTCAAAAT
LOC_Os01g03370
OsAffx.10893.2.S1_at--820--3951Chr01:1353474..1353498 (25 bp)
CGGTCCAACGATGTGAGTCAAAATA
LOC_Os01g03370
OsAffx.10893.2.S1_at--828--7271Chr01:1353472..1353496 (25 bp)
GTCCAACGATGTGAGTCAAAATAGT
LOC_Os01g03370
OsAffx.10893.2.S1_at--1157--771Chr01:1353464..1353488 (25 bp)
ATGTGAGTCAAAATAGTGGCGTGTC
LOC_Os01g03370
OsAffx.10893.2.S1_at--462--7391Chr01:1353462..1353486 (25 bp)
GTGAGTCAAAATAGTGGCGTGTCTA
LOC_Os01g03370
OsAffx.10893.2.S1_at--860--6091Chr01:1353460..1353484 (25 bp)
GAGTCAAAATAGTGGCGTGTCTATG
LOC_Os01g03370
OsAffx.10893.2.S1_at--610--3091Chr01:1353453..1353477 (25 bp)
AATAGTGGCGTGTCTATGATGGAGC
LOC_Os01g03370
OsAffx.10893.2.S1_at--1063--10071Chr01:1353451..1353475 (25 bp)
TAGTGGCGTGTCTATGATGGAGCAT
LOC_Os01g03370
OsAffx.10893.2.S1_at--1156--7531Chr01:1353449..1353473 (25 bp)
GTGGCGTGTCTATGATGGAGCATAA
LOC_Os01g03370
OsAffx.10893.2.S1_at--223--8371Chr01:1353447..1353471 (25 bp)
GGCGTGTCTATGATGGAGCATAATT
LOC_Os01g03370
OsAffx.10893.2.S1_at--1079--4651Chr01:1353446..1353470 (25 bp)
GCGTGTCTATGATGGAGCATAATTT
LOC_Os01g03370
Target Sequence 
CCGGTCCAACGATGTGAGTCAAAATAGTGGCGTGTCTATGATGGAGCATAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10893.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis