Browse Element(s) Details


OsAffx.10894.1.S1_at

Description tigr:9629.m00255
TID=OsAffx.10894.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0340011/11Ubiquitin ligase sina, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03330Os.19472.1.S1_at10/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.32459.2.S1_x_at1/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.4653.1.S1_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.37729.1.S1_s_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03350NANA1+1347622..1347909hypothetical protein
LOC_Os01g03360Os.37729.1.S1_s_at11/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03360Os.32459.2.S1_x_at1/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03370OsAffx.10893.1.S1_x_at11/111+1353403..1358059Protein kinase domain containing protein
LOC_Os01g03370OsAffx.10893.2.S1_at11/111+1353403..1358059Protein kinase domain containing protein
LOC_Os01g03380OsAffx.22805.1.S1_at7/111+1360512..1361069Bowman-Birk type bran trypsin inhibitor precursor, putative
LOC_Os01g03390Os.22594.1.S1_at11/111+1362345..1363244Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03390Os.32459.2.S1_x_at1/111+1362345..1363244Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03400OsAffx.10894.1.S1_at11/111+1365693..1366594Ubiquitin ligase sina, putative
LOC_Os01g03410Os.17213.1.S1_x_at1/111+1369765..1370940hypothetical protein
LOC_Os01g03410OsAffx.25095.5.S1_x_at1/111+1369765..1370940hypothetical protein
LOC_Os01g03420OsAffx.10592.1.S1_at10/111+1371971..1374044Seven in absentia protein family protein
LOC_Os01g03429OsAffx.23100.1.S1_x_at11/111+1376493..1378945hypothetical protein
LOC_Os01g03429OsAffx.23100.1.S1_at11/111+1376493..1378945hypothetical protein
LOC_Os01g03440OsAffx.11270.1.S1_at8/111+1380448..1381886hypothetical protein
LOC_Os01g03440OsAffx.11270.1.S1_x_at7/111+1380448..1381886hypothetical protein
LOC_Os01g03452OsAffx.31552.2.S1_at10/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.11270.1.S1_x_at6/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.11270.1.S1_at6/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.31552.3.S1_x_at5/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.31552.1.S1_x_at4/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.3613.1.S1_x_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.22940.1.S1_s_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452Os.6098.1.A1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.3613.1.S1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.23624.1.S1_at1/111+1383210..1391278hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10894.1.S1_at--529--5111Chr01:1365952..1365976 (25 bp)
GCACTTGCAATGGTGAGCGTGTCAA
LOC_Os01g03400
OsAffx.10894.1.S1_at--989--2231Chr01:1366009..1366033 (25 bp)
ACAATTGGCATGGACGTCTTGGACT
LOC_Os01g03400
OsAffx.10894.1.S1_at--219--8531Chr01:1366028..1366052 (25 bp)
TGGACTGCCCTGTCTGCTTTGAACC
LOC_Os01g03400
OsAffx.10894.1.S1_at--524--2651Chr01:1366057..1366227 (25 bp)
AAGCCTCCGATTTTCCAGTGTTCTG
LOC_Os01g03400
OsAffx.10894.1.S1_at--392--1571Chr01:1366434..1366458 (25 bp)
AGCTGAATAAGTGCCCTGGGTGCTC
LOC_Os01g03400
OsAffx.10894.1.S1_at--608--8631Chr01:1366450..1366474 (25 bp)
TGGGTGCTCAAGAACCTCCTTTGAA
LOC_Os01g03400
OsAffx.10894.1.S1_at--899--5431Chr01:1366461..1366485 (25 bp)
GAACCTCCTTTGAACACTGCTTGGG
LOC_Os01g03400
OsAffx.10894.1.S1_at--797--3331Chr01:1366475..1366499 (25 bp)
CACTGCTTGGGCATGGAGCGCATTG
LOC_Os01g03400
OsAffx.10894.1.S1_at--121--8551Chr01:1366488..1366512 (25 bp)
TGGAGCGCATTGTCGAATCCGCAGT
LOC_Os01g03400
OsAffx.10894.1.S1_at--825--3031Chr01:1366503..1366527 (25 bp)
AATCCGCAGTGGTTCCTTGCACCTA
LOC_Os01g03400
OsAffx.10894.1.S1_at--496--9951Chr01:1366526..1366550 (25 bp)
TACGCCGAGCATGGATGCACCAACA
LOC_Os01g03400
Target Sequence 
GCACTTGCAATGGTGAGCGTGTCAATGGGACATAATGCTGACAAGAAGCAGGTTGTCACAATTGGCATGGACGTCTTGGA
CTGCCCTGTCTGCTTTGAACCCTTCAAGCCTCCGATTTTCCAGTGTTCTGTGGGGCATTTCATCTGCTCCTCTTGCTGCA
ACAAGCTGAATAAGTGCCCTGGGTGCTCAAGAACCTCCTTTGAACACTGCTTGGGCATGGAGCGCATTGTCGAATCCGCA
GTGGTTCCTTGCACCTACGCCGAGCATGGATGCACCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis