Browse Element(s) Details


OsAffx.10960.1.S1_at

Description tigr:9629.m00748
TID=OsAffx.10960.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0812011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08060NANA1+3900292..3901712transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08070Os.41934.1.A1_x_at10/111+3902051..3904231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08070Os.14491.2.S1_x_at2/111+3902051..3904231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08080NANA1+3910503..3913076expressed protein
LOC_Os01g08090Os.32668.1.S1_at11/111+3914720..3917234Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os01g08100NANA1+3918158..3919936Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os01g08110Os.551.1.S1_at11/111+3921183..3923358UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g08120OsAffx.10960.1.S1_at11/111+3924252..3926249pentatricopeptide, putative, expressed
LOC_Os01g08130NANA1+3929149..3930154NPH3 family protein, expressed
LOC_Os01g08140Os.26710.1.S1_at3/111+3934551..3935714non-phototropic hypocotyl protein, putative
LOC_Os01g08150OsAffx.4509.1.S1_s_at11/111+3935935..3939207expressed protein
LOC_Os01g08150Os.554.1.S1_at11/111+3935935..3939207expressed protein
LOC_Os01g08150OsAffx.4509.1.S1_x_at2/111+3935935..3939207expressed protein
LOC_Os01g08160Os.29819.2.S1_x_at11/111+3949841..3951733myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10960.1.S1_at--828--3831Chr01:3924824..3924848 (25 bp)
CTGCTGGCATCCTGTAGGGTTTATG
LOC_Os01g08120
OsAffx.10960.1.S1_at--729--1631Chr01:3924769..3924793 (25 bp)
AGCGTCTCCTTGAGTTGGATCCAGA
LOC_Os01g08120
OsAffx.10960.1.S1_at--872--1491Chr01:3924740..3924764 (25 bp)
AGCACAGCGTACATCTTGTTGTCAA
LOC_Os01g08120
OsAffx.10960.1.S1_at--1147--10211Chr01:3924593..3924617 (25 bp)
TTTGTAGCCGCTGATAGGTCTCATC
LOC_Os01g08120
OsAffx.10960.1.S1_at--1088--3891Chr01:3924511..3924535 (25 bp)
CTGGATATGTGCCTGATGTAACTGA
LOC_Os01g08120
OsAffx.10960.1.S1_at--1066--2551Chr01:3924492..3924516 (25 bp)
AACTGAGGTCCTTGTTGAAGTCACG
LOC_Os01g08120
OsAffx.10960.1.S1_at--329--1471Chr01:3924454..3924478 (25 bp)
AGAAGGTTCTTTACTGGCACAGTGA
LOC_Os01g08120
OsAffx.10960.1.S1_at--565--5331Chr01:3924429..3924453 (25 bp)
GAAGTTGGCAGTCACTTTTGCTTTA
LOC_Os01g08120
OsAffx.10960.1.S1_at--285--9691Chr01:3924418..3924442 (25 bp)
TCACTTTTGCTTTACTCACTTCAGA
LOC_Os01g08120
OsAffx.10960.1.S1_at--551--8671Chr01:3924355..3924379 (25 bp)
TGTGTTTGGACTGCCACAACGCAAT
LOC_Os01g08120
OsAffx.10960.1.S1_at--310--5631Chr01:3924282..3924306 (25 bp)
GACACGCTTCCATCATTTTAGACAT
LOC_Os01g08120
Target Sequence 
CTGCTGGCATCCTGTAGGGTTTATGGTAATTCAGAAATAGGTGAATTGGCAGCGGAGCGTCTCCTTGAGTTGGATCCAGA
TAACAGCACAGCGTACATCTTGTTGTCAAACATGTATGCAAAATCTAATAGATGGAAAGATGTCCGACGGATTAGGCAGA
TAATAATGGAGAAAGGAATCAAGAAAGAACCTGGTTGCAGTATGATTGAAATGAATGGCATAATTCACGAATTTGTAGCC
GCTGATAGGTCTCATCCTATGAATAAAGAAATCTACTCAAAGTTGGAAAATGTGCTAACTGATTTGAGGAATGCTGGATA
TGTGCCTGATGTAACTGAGGTCCTTGTTGAAGTCACGGAAGAGGAAAAGCAGAAGGTTCTTTACTGGCACAGTGAGAAGT
TGGCAGTCACTTTTGCTTTACTCACTTCAGAATCTAATGTTATCATAAGAATTGTGAAAAACTTGAGGATGTGTTTGGAC
TGCCACAACGCAATAAAATTGATATCGAAATTGTATGGAAGAGAGGTCATTGTGAGGGATAGGACACGCTTCCATCATTT
TAGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis