Browse Element(s) Details

OsAffx.10967.5.S1_x_at

Description

tigr:9634.m03770
TID=OsAffx.10967.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g39420	10/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g39390	OsAffx.28006.1.S1_at	11/11	6	+	23378161..23380411	Transferase family protein, expressed
LOC_Os06g39400	OsAffx.31727.1.S1_at	6/11	6	+	23381208..23387390	retrotransposon protein, putative, unclassified
LOC_Os06g39400	OsAffx.27238.1.S1_at	1/11	6	+	23381208..23387390	retrotransposon protein, putative, unclassified
LOC_Os06g39400	Os.51311.1.S1_at	1/11	6	+	23381208..23387390	retrotransposon protein, putative, unclassified
LOC_Os06g39410	Os.46578.1.S1_at	3/11	6	+	23400153..23400370	hypothetical protein
LOC_Os06g39410	Os.46578.1.S1_x_at	2/11	6	+	23400153..23400370	hypothetical protein
LOC_Os06g39420	OsAffx.10967.5.S1_x_at	10/11	6	+	23404705..23406362	hypothetical protein
LOC_Os06g39420	OsAffx.10967.5.S1_at	10/11	6	+	23404705..23406362	hypothetical protein
LOC_Os06g39430	OsAffx.5062.1.S1_at	11/11	6	+	23408358..23409028	hypothetical protein
LOC_Os06g39440	OsAffx.28007.1.S1_at	11/11	6	+	23413389..23414493	Amidophosphoribosyltransferase, chloroplast precursor, putative
LOC_Os06g39450	Os.2987.3.S1_x_at	1/11	6	+	23424305..23428378	transposon protein, putative, unclassified
LOC_Os06g39460	Os.56073.1.S1_at	9/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.8753.4.S1_x_at	8/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.46557.2.S1_x_at	6/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.46557.1.S1_x_at	6/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.46557.1.S1_at	6/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.8753.4.S1_at	2/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	OsAffx.5618.1.S1_x_at	1/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	OsAffx.5618.1.S1_at	1/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.10967.5.S1_x_at--307--113	1	Chr06:23404735..23404759 (25 bp)	AGTGCTGTAACTGTACTGTACTCTG	LOC_Os06g39420
OsAffx.10967.5.S1_x_at--1--257	1	Chr06:23404743..23404767 (25 bp)	AACTGTACTGTACTCTGAAGCGTCA	LOC_Os06g39420
OsAffx.10967.5.S1_x_at--85--389	1	Chr06:23404745..23404769 (25 bp)	CTGTACTGTACTCTGAAGCGTCAAC	LOC_Os06g39420
OsAffx.10967.5.S1_x_at--151--993	1	Chr06:23404748..23404772 (25 bp)	TACTGTACTCTGAAGCGTCAACTGA	LOC_Os06g39420
OsAffx.10967.5.S1_x_at--494--701	1	Chr06:23404752..23404776 (25 bp)	GTACTCTGAAGCGTCAACTGAGGCT	LOC_Os06g39420
OsAffx.10967.5.S1_x_at--719--377	1	Chr06:23404755..23404779 (25 bp)	CTCTGAAGCGTCAACTGAGGCTGCA	LOC_Os06g39420
OsAffx.10967.5.S1_x_at--430--541	1	NONE	GAAGCGTCAACTGAGGCTGCAGGCA	NONE
OsAffx.10967.5.S1_x_at--948--163	1	Chr06:23404761..23404781 (21 bp)	AGCGTCAACTGAGGCTGCAGGCAAG	LOC_Os06g39420
OsAffx.10967.5.S1_x_at--131--837	1	Chr06:23405686..23405710 (25 bp)	GGCGGTCTTCGAGGATGCAGTCCAC	LOC_Os06g39420
OsAffx.10967.5.S1_x_at--1091--891	1	Chr06:23406136..23406160 (25 bp)	TGACCGACTTGACACTGCGCGCCAT	LOC_Os06g39420
OsAffx.10967.5.S1_x_at--869--1071	1	Chr06:23406244..23406268 (25 bp)	TTGCTGACCTGTTCCTGTCGTCGAG	LOC_Os06g39420

Target Sequence

AGTGCTGTAACTGTACTGTACTCTGAAGCGTCAACTGAGGCTGCAGGCAAGGGCGGCGACGGCAAGCGGGAGCCGGAGTG
GTGGCGGCGGCGATGGCTGACGCGGCAGCAGCGGGCGGGCGCCAGCTTCCCCATCGCCATCGACCTCGACCTCGGCGTAT
CCGCATGCGTGATGGCGGCGGTCTTCGAGGATGCAGTCCACGAACCCAGCCCGGCAATCCGGCCAACCCCCACAATGCTC
CACGGGCAGATCACCGGGACGCTGACCGACTTGACACTGCGCGCCATCATGTGGGAGTGCGGCTTCCGGTGGCGTGAGGA
GTTCCTGGAGACGCTGGGAGAGGCGCAGAAGAAGGCGACTAGGTTCGGCGTTGCTGACCTGTTCCTGTCGTCGAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis