Browse Element(s) Details


OsAffx.10972.1.S1_x_at

Description gb:NM_189579.1
DB_XREF= gi:34906241
GEN=P0489A01.5
TID=OsAffx.10972.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0489A01.5 (P0489A01.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0875011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08710Os.55762.1.S1_at11/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710Os.30505.1.S1_at10/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_x_at9/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_at8/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08720NANA1+4354526..4357857transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.47463.1.S1_x_at6/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.14491.2.S1_x_at5/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08740OsAffx.10971.1.S1_at2/111+4365540..4366067hypothetical protein
LOC_Os01g08750OsAffx.10972.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.25107.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.2.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.505.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08760OsAffx.10973.2.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_x_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.2.S1_at10/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08770Os.17792.1.S1_at11/111+4394454..4398744WD-repeat protein 46, putative, expressed
LOC_Os01g08780Os.29290.1.S1_at10/111+4399470..4404094inositol-1,4,5-trisphosphate 5-Phosphatase, putative, expressed
LOC_Os01g08790OsAffx.23165.1.S1_x_at11/111+4412218..4412934Histone-like transcription factor and archaeal histone family protein
LOC_Os01g08800OsAffx.21912.1.S1_at11/111+4414085..4415729Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10972.1.S1_x_at--1054--8571Chr01:4377381..4377405 (25 bp)
TGGTAGACTACCTTTGGCTGTCCTT
LOC_Os01g08750
OsAffx.10972.1.S1_x_at--229--8351Chr01:4377396..4377420 (25 bp)
GGCTGTCCTTCAACTGCAACTATTG
LOC_Os01g08750
OsAffx.10972.1.S1_x_at--242--3271Chr01:4377412..4377436 (25 bp)
CAACTATTGCGCCAGAGGGAATCAT
LOC_Os01g08750
OsAffx.10972.1.S1_x_at--65--8211Chr01:4377429..4377453 (25 bp)
GGAATCATTTTCCAACGATCCAGAA
LOC_Os01g08750
OsAffx.10972.1.S1_x_at--484--2391Chr01:4377597..4377621 (25 bp)
AAACTGGATTGGCTGTCGCAACCCT
LOC_Os01g08750
OsAffx.10972.1.S1_x_at--302--1171Chr01:4377676..4377700 (25 bp)
AGTCAGGAGGCTACTTAGGCGGCAA
LOC_Os01g08750
OsAffx.10972.1.S1_x_at--126--5971Chr01:4377979..4378003 (25 bp)
GAGAATGTCATTCACGATGCTGCAA
LOC_Os01g08750
OsAffx.10972.1.S1_x_at--886--9471Chr01:4378044..4378068 (25 bp)
TCTCGATATTCATAACCACTGTCCT
LOC_Os01g08750
OsAffx.10972.1.S1_x_at--404--8691Chr01:4378180..4378204 (25 bp)
TGTGCTGCCATATGGTCTGATGCTT
LOC_Os01g08750
OsAffx.10972.1.S1_x_at--1067--2551Chr01:4378215..4378239 (25 bp)
AACTGTGGACCGTGTAAGTCACGAC
LOC_Os01g08750
OsAffx.10972.1.S1_x_at--970--2831Chr01:4378230..4378254 (25 bp)
AAGTCACGACTTAACATTTTTGCTT
LOC_Os01g08750
Target Sequence 
TGGTAGACTACCTTTGGCTGTCCTTCAACTGCAACTATTGCGCCAGAGGGAATCATTTTCCAACGATCCAGAAGATGTTT
TCTCTGAAGTTCATGAAATAGGAAGGTCCATCATATATGACCTGTTAATGAAGGGTGAAACTGGATTGGCTGTCGCAACC
CTGGAAAGACTAGGAGATGACATAGAGTCAGACCTCAGACAACTTATGCAAGGTACAGTCAGGAGGCTACTTAGGCGGCA
AATTGCCGAGGAGATGAAGAAGCGTGGGGAGAATGTCATTCACGATGCTGCAAAAATTGTTACTCTACCAGGAGAAGATA
AACCAGTACTAGTTCTCGATATTCATAACCACTGTCCTATTGAATGTGGTGATGTTGATGGAGCTGTGATCGGTTCTTGG
GCGAATGTGAATGATTACACTAATTTGAAGGAGTTCTCTGAAAGCATTTTATCTGATGGTTATTGGGCCTGTGCTGCCAT
ATGGTCTGATGCTTGGGATCAAAGAACTGTGGACCGTGTAAGTCACGACTTAACATTTTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10972.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis