Browse Element(s) Details


OsAffx.10972.2.S1_x_at

Description tigr:9629.m00818
TID=OsAffx.10972.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0875011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08710Os.55762.1.S1_at11/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710Os.30505.1.S1_at10/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_x_at9/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_at8/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08720NANA1+4354526..4357857transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.47463.1.S1_x_at6/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.14491.2.S1_x_at5/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08740OsAffx.10971.1.S1_at2/111+4365540..4366067hypothetical protein
LOC_Os01g08750OsAffx.10972.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.25107.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.2.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.505.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08760OsAffx.10973.2.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_x_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.2.S1_at10/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08770Os.17792.1.S1_at11/111+4394454..4398744WD-repeat protein 46, putative, expressed
LOC_Os01g08780Os.29290.1.S1_at10/111+4399470..4404094inositol-1,4,5-trisphosphate 5-Phosphatase, putative, expressed
LOC_Os01g08790OsAffx.23165.1.S1_x_at11/111+4412218..4412934Histone-like transcription factor and archaeal histone family protein
LOC_Os01g08800OsAffx.21912.1.S1_at11/111+4414085..4415729Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10972.2.S1_x_at--1002--9491Chr01:4389304..4389328 (25 bp)
TCTCCTATCACTTCAGATCCGTATA
LOC_Os01g08750
OsAffx.10972.2.S1_x_at--1004--6871Chr01:4389324..4389348 (25 bp)
GTATACCTGACCTTCTGTGGATTGG
LOC_Os01g08750
OsAffx.10972.2.S1_x_at--345--7151Chr01:4389348..4389372 (25 bp)
GTCTTTCGGAAACCAATGCTCGGCG
LOC_Os01g08750
OsAffx.10972.2.S1_x_at--884--3011Chr01:4389362..4389386 (25 bp)
AATGCTCGGCGGATTTTCGTAGAAC
LOC_Os01g08750
OsAffx.10972.2.S1_x_at--74--3071Chr01:4389387..4389411 (25 bp)
AATCTAGGTTCCAAGAGGCCCTCAT
LOC_Os01g08750
OsAffx.10972.2.S1_x_at--863--891Chr01:4389402..4389426 (25 bp)
AGGCCCTCATTGTTGCTGAAGCATA
LOC_Os01g08750
OsAffx.10972.2.S1_x_at--455--4751Chr01:4389506..4389530 (25 bp)
GCTGAGTTTGTGTTGGTGCTGCCCC
LOC_Os01g08750
OsAffx.10972.2.S1_x_at--189--751Chr01:4389552..4389576 (25 bp)
AGCTTGCAAGATTTTACCGGGCGGA
LOC_Os01g08750
OsAffx.10972.2.S1_x_at--787--10851Chr01:4389657..4389681 (25 bp)
TTGGCAGATCGTTCAGGAGCCTTCT
LOC_Os01g08750
OsAffx.10972.2.S1_x_at--269--1651Chr01:4389674..4389698 (25 bp)
AGCCTTCTCCGTCGAACGAGGGATA
LOC_Os01g08750
OsAffx.10972.2.S1_x_at--274--10071Chr01:4389739..4389763 (25 bp)
TAGTGACGTTCTTGACGCATGCAAT
LOC_Os01g08750
Target Sequence 
TCTCCTATCACTTCAGATCCGTATACCTGACCTTCTGTGGATTGGTCTTTCGGAAACCAATGCTCGGCGGATTTTCGTAG
AACAATCTAGGTTCCAAGAGGCCCTCATTGTTGCTGAAGCATACAACATAAATCAGCCGATGGAATGGGCTCCAGTTTTT
TGGAACCAAATGCTGAAACCAGATCTAATTGAGCAATTTGTGGCTGAGTTTGTGTTGGTGCTGCCCCTGCAGCCACCAAT
GCTACTCGAGCTTGCAAGATTTTACCGGGCGGAGGTTGCAGCCAGGGGGGACCAGTCACACTTCTCGGTCTGGCTTTCGC
CCGGAGGCTTGCCTGCAGAGTGGGTGAAACATCTTGGCAGATCGTTCAGGAGCCTTCTCCGTCGAACGAGGGATATGAGG
CTGAGGCTGCAGTTGGCAACTCTTGCAACGGGATTTAGTGACGTTCTTGACGCATGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10972.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis