Browse Element(s) Details


OsAffx.10983.1.S1_at

Description gb:NM_189681.1
DB_XREF= gi:34906445
GEN=P0671B11.15
TID=OsAffx.10983.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0671B11.15 (P0671B11.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g096501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09620Os.49042.1.A1_s_at11/111+4945934..4947925zinc finger family protein, putative, expressed
LOC_Os01g09620Os.20244.1.S1_at11/111+4945934..4947925zinc finger family protein, putative, expressed
LOC_Os01g09620Os.37438.1.S1_at1/111+4945934..4947925zinc finger family protein, putative, expressed
LOC_Os01g09640Os.623.1.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.3.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.1.S1_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.2.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09650OsAffx.10983.1.S1_at1/111+4972893..4973387hypothetical protein
LOC_Os01g09660OsAffx.23171.1.S1_at11/111+4975900..4976830heavy metal-associated domain containing protein
LOC_Os01g09670Os.625.1.S1_at11/111+4978984..4981945Pollen-specific protein SF21, putative, expressed
LOC_Os01g09680NANA1+4984506..4985003hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_x_at9/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.2.S1_at8/111+4988315..4990670hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10983.1.S1_at--230--8411Chr01:4973310..4973334 (25 bp)
GGCCCACGATTGGAGAGGCGCTTTT
LOC_Os01g09650
OsAffx.10983.1.S1_at--1123--3431Chr01:4973627..4973651 (25 bp)
CAGTACAGTTTCAGATAGATATCCA
NONE
OsAffx.10983.1.S1_at--933--1251Chr01:4973643..4973667 (25 bp)
AGATATCCAGCACCAGAATCCTGCA
NONE
OsAffx.10983.1.S1_at--435--1471Chr01:4973657..4973681 (25 bp)
AGAATCCTGCATCTTGTCTGGTTCT
NONE
OsAffx.10983.1.S1_at--653--431Chr01:4973667..4973691 (25 bp)
ATCTTGTCTGGTTCTCCTGCAAGAA
NONE
OsAffx.10983.1.S1_at--849--7891Chr01:4973676..4973700 (25 bp)
GGTTCTCCTGCAAGAAGTTGTACTG
NONE
OsAffx.10983.1.S1_at--1131--6631Chr01:4973692..4973716 (25 bp)
GTTGTACTGAAGAATTCCTTTCCCT
NONE
OsAffx.10983.1.S1_at--1072--5351Chr01:4973700..4973724 (25 bp)
GAAGAATTCCTTTCCCTTCTATCCA
NONE
OsAffx.10983.1.S1_at--731--10131Chr01:4973719..4973743 (25 bp)
TATCCAACTCTTTTTTCGGAGAAGA
NONE
OsAffx.10983.1.S1_at--775--5231Chr01:4973742..4973766 (25 bp)
GAATCCAATCCGTTGGGAAAATCCA
NONE
OsAffx.10983.1.S1_at--1138--8151Chr01:4973757..4973781 (25 bp)
GGAAAATCCATCTCTTTTTCTGGAG
NONE
Target Sequence 
GGCCCACGATTGGAGAGGCGCTTTTGGCTGGCCAAAGTTGGCCAGCGTGGGGAGAAGTTTGGCCAGCCAGNNNNNNANCC
AGTACAGTTTCAGATAGATATCCAGCACCAGAATCCTGCATCTTGTCTGGTTCTCCTGCAAGAAGTTGTACTGAAGAATT
CCTTTCCCTTCTATCCAACTCTTTTTTCGGAGAAGAATCCAATCCGTTGGGAAAATCCATCTCTTTTTCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis