Browse Element(s) Details


OsAffx.11003.1.S1_s_at

Description gb:NM_188346.1
DB_XREF= gi:34903775
TID=OsAffx.11003.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1087011/11CBL-interacting serine/threonine-protein kinase 15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10840Os.18766.1.S1_s_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.18766.1.S1_x_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.48021.1.S1_x_at2/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.52172.2.S1_x_at1/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10850Os.1406.1.S1_at11/111+5786135..5787911Peroxidase family protein, expressed
LOC_Os01g10860Os.1408.1.S1_at11/111+5791551..5794476expressed protein
LOC_Os01g10860OsAffx.5984.1.S1_s_at1/111+5791551..5794476expressed protein
LOC_Os01g10870OsAffx.11003.1.S1_s_at11/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.11003.2.S1_at9/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.9832.1.S1_x_at1/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10880NANA1+5804847..5805142expressed protein
LOC_Os01g10890Os.1411.1.S1_at11/111+5806391..5808419CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10900Os.33454.1.S1_at11/111+5811629..5816009Leucine Rich Repeat family protein, expressed
LOC_Os01g10910Os.43764.1.A1_at5/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.7.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.2.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.3.S1_x_at1/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10920OsAffx.11852.2.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_x_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005829cellular_componentcytosol
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11003.1.S1_s_at--331--10531Chr01:5797294..5797318 (25 bp)
TTCACCTGCTTCGAACTTGACGACG
LOC_Os01g10870
OsAffx.11003.1.S1_s_at--147--3831Chr01:5797299..5797323 (25 bp)
CTGCTTCGAACTTGACGACGACGCC
LOC_Os01g10870
OsAffx.11003.1.S1_s_at--17--9091Chr01:5797389..5797413 (25 bp)
TGCTCCGACGCGACCAAGAAAAGCC
LOC_Os01g10870
OsAffx.11003.1.S1_s_at--434--1411Chr01:5797405..5797429 (25 bp)
AGAAAAGCCGGGAGCCTGACGTCGT
LOC_Os01g10870
OsAffx.11003.1.S1_s_at--860--1671Chr01:5797417..5797441 (25 bp)
AGCCTGACGTCGTGCGACTCGGCGC
LOC_Os01g10870
OsAffx.11003.1.S1_s_at--818--1511Chr01:5797598..5797622 (25 bp)
AGCAGCAGAAACACACGGCGAGGTT
LOC_Os01g10870
OsAffx.11003.1.S1_s_at--8--2471Chr01:5797607..5797631 (25 bp)
AACACACGGCGAGGTTCGTGTCGGC
LOC_Os01g10870
OsAffx.11003.1.S1_s_at--564--4251Chr01:5797636..5797660 (25 bp)
CCGGTGGAGGTGATCGTGGCGACGC
LOC_Os01g10870
OsAffx.11003.1.S1_s_at--2--6051Chr01:5797771..5797795 (25 bp)
GAGATCTACGAGCTCACGCCGGAGC
LOC_Os01g10870
OsAffx.11003.1.S1_s_at--202--4571Chr01:5797829..5797853 (25 bp)
GCGCCGCCGAGTACGAGGAGTTCTT
LOC_Os01g10870
OsAffx.11003.1.S1_s_at--265--991Chr01:5797844..5797868 (25 bp)
AGGAGTTCTTCCGGGCGCGGCTCAA
LOC_Os01g10870
Target Sequence 
TTCACCTGCTTCGAACTTGACGACGACGCCGCCGTCGACGCGCCCACCTCGCCGCCGGACACGCCGCGGACAGTGGACAG
CGGCGACGTCGGCGCTGCTCCGACGCGACCAAGAAAAGCCGGGAGCCTGACGTCGTGCGACTCGGCGCCCCTGAACGCGT
TCGACATCATCTCCTTCTCCCCGGGGTTCGACCTCTCAGGACTCATCCCGGAGCAGCAGAAACACACGGCGAGGTTCGTG
TCGGCGGCGCCGGTGGAGGTGATCGTGGCGACGCTGGAGGCGGCCGCGGCGGCGGCGGGCATGGCGGTGCGGGAGAGGGA
GGACGGGTCGATCAGCATGGAGGGGACACGCGAGGGCGAGCACGGCGCGCTGGCGGTGGCCGCGGAGATCTACGAGCTCA
CGCCGGAGCTGGTGGTGGTGGAGGTGCGGCGGAAGGCCGGCGGCGCCGCCGAGTACGAGGAGTTCTTCCGGGCGCGGCTC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11003.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis