Browse Element(s) Details


OsAffx.11044.1.S1_x_at

Description gb:NM_188730.1
DB_XREF= gi:34904543
GEN=B1066G12.17
TID=OsAffx.11044.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1066G12.17 (B1066G12.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g141108/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14080Os.36458.1.S1_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14080Os.36458.2.S1_x_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14090Os.36194.1.S1_at11/111+7888343..7891521Kinesin-4, putative, expressed
LOC_Os01g14100Os.38014.1.S1_at11/111+7891763..7897352folate/biopterin transporter family protein, expressed
LOC_Os01g14110OsAffx.11044.1.S1_x_at8/111+7900615..7901557expressed protein
LOC_Os01g14120OsAffx.11045.1.S1_at11/111+7921197..7921589hypothetical protein
LOC_Os01g14130OsAffx.23232.1.S1_x_at11/111+7923660..7924361expressed protein
LOC_Os01g14130OsAffx.23232.1.S1_at11/111+7923660..7924361expressed protein
LOC_Os01g14140Os.10494.1.S1_at11/111+7924892..7926564Glucan endo-1,3-beta-glucosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11044.1.S1_x_at--396--9231Chr01:7900971..7900995 (25 bp)
TCCAGGCGCCGCGTGCTCGTCAAGG
LOC_Os01g14110
OsAffx.11044.1.S1_x_at--864--3771Chr01:7900956..7900980 (25 bp)
CTCGTCAAGGCCGGCGGGAAGATCC
LOC_Os01g14110
OsAffx.11044.1.S1_x_at--1069--931Chr01:7900815..7900839 (25 bp)
AGGAAGGTGAAGGAGCGCCTCCGCG
LOC_Os01g14110
OsAffx.11044.1.S1_x_at--972--9091Chr01:7900742..7900766 (25 bp)
TGCTCGAGGAGACGGCCGACTACGT
LOC_Os01g14110
OsAffx.11044.1.S1_x_at--1063--4131Chr01:7900712..7900736 (25 bp)
CGCTGGAGATGCAGGTCAAGGCCAT
LOC_Os01g14110
OsAffx.11044.1.S1_x_at--1002--1291Chr01:7900706..7900730 (25 bp)
AGATGCAGGTCAAGGCCATGCGCGC
LOC_Os01g14110
OsAffx.11044.1.S1_x_at--9--4031Chr01:7900646..7900670 (25 bp)
CGTCAACTCCGCAGCAGGCGGAGGC
LOC_Os01g14110
OsAffx.11044.1.S1_x_at--458--4531Chr01:7900620..7900644 (25 bp)
GCCGCCGACGAGACCGAGATGGAGA
LOC_Os01g14110
OsAffx.11044.1.S1_x_at--171--211Chr01:7900455..7900479 (25 bp)
ATTTGAGGAGGGTAATTGCGATGAT
NONE
OsAffx.11044.1.S1_x_at--201--71Chr01:7900441..7900465 (25 bp)
ATTGCGATGATTGATGCTGCTGATA
NONE
OsAffx.11044.1.S1_x_at--668--10771Chr01:7900431..7900455 (25 bp)
TTGATGCTGCTGATAATGCTGCTGC
NONE
Target Sequence 
TCCAGGCGCCGCGTGCTCGTCAAGGCCGGCGGGAAGATCCGCCGCGGCGGCGGTGGCAACAGCTGCCGCCGCCCGCAGGC
GCGCGCCGCGGCGGCGGCGGCGGCTAAGGCGGCCGCGGCCGCCTCCTCCGCCGGCGAGCCCCCGATGCTGAAGGAGAGGA
AGGTGAAGGAGCGCCTCCGCGTGCTGGGCCGCCTCGTCCCCGGATGCCGGAAGCTCCCCGCGCCGGCGCTGCTCGAGGAG
ACGGCCGACTACGTGGCCGCGCTGGAGATGCAGGTCAAGGCCATGCGCGCCCTCGCCGACGCGCTCGCCGCCGCGCAGCT
CTCCTCGTCAACTCCGCAGCAGGCGGAGGCCGCCGCCGACGAGACCGAGATGGAGAGGNNNTGGGATTTGAGGAGGGTAA
TTGCGATGATTGATGCTGCTGATAATGCTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11044.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis