Browse Element(s) Details


OsAffx.11065.1.S1_x_at

Description tigr:9629.m01560
TID=OsAffx.11065.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1566911/11Transferase family protein
LOC_Os01g1570911/11Transferase family protein
LOC_Os01g156802/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15630Os.117.2.S1_x_at11/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed
LOC_Os01g15630Os.117.1.S1_at10/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed
LOC_Os01g15640Os.4387.1.S1_at10/111+8789456..8794160No apical meristem protein, expressed
LOC_Os01g15650NANA1+8802509..8805319transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g15660Os.27385.2.S1_x_at11/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.27385.3.S1_at9/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.45507.1.S1_at1/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15669OsAffx.11065.1.S1_x_at11/111+8813692..8815120Transferase family protein
LOC_Os01g15669OsAffx.11065.1.S1_at11/111+8813692..8815120Transferase family protein
LOC_Os01g15680Os.53832.1.S1_at10/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.11065.1.S1_at3/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.11065.1.S1_x_at2/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.27865.1.S1_x_at1/111+8817938..8819411expressed protein
LOC_Os01g15690Os.35046.2.S1_x_at11/111+8819792..8824980retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g15690Os.35046.1.S1_at9/111+8819792..8824980retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g15700OsAffx.27865.1.S1_x_at10/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700Os.53832.1.S1_at8/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700OsAffx.9725.1.S1_at3/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700OsAffx.27865.2.S1_at1/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15709OsAffx.11065.1.S1_at11/111+8832376..8833804Transferase family protein
LOC_Os01g15709OsAffx.11065.1.S1_x_at11/111+8832376..8833804Transferase family protein
LOC_Os01g15720NANA1+8837748..8843254Tobamovirus movement protein containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11065.1.S1_x_at--401--4053Chr01:8833266..8833290 (25 bp)
CGATGCGCAGCTACGTGGGCAACGT
LOC_Os01g15709
OsAffx.11065.1.S1_x_at--1025--8633Chr01:8833281..8833305 (25 bp)
TGGGCAACGTCACGACCTTCGCGGT
LOC_Os01g15709
OsAffx.11065.1.S1_x_at--567--1292Chr01:8833326..8833350 (25 bp)
AGATCCAGCGGAAGCCCCTGGCGGA
LOC_Os01g15709
OsAffx.11065.1.S1_x_at--662--3932Chr01:8833386..8833410 (25 bp)
CGGCGTACGGCGAGCACTTCCAGGA
LOC_Os01g15709
OsAffx.11065.1.S1_x_at--555--2712Chr01:8833445..8833469 (25 bp)
AAGCAGCGGTACATCGACACGGCGA
LOC_Os01g15709
OsAffx.11065.1.S1_x_at--688--4032Chr01:8833506..8833530 (25 bp)
CGTTCGCGTCGTTCGAGGTGGACAC
LOC_Os01g15709
OsAffx.11065.1.S1_x_at--564--1052Chr01:8833521..8833545 (25 bp)
AGGTGGACACCGACTTCGGCCACGG
LOC_Os01g15709
OsAffx.11065.1.S1_x_at--331--9272Chr01:8833574..8833598 (25 bp)
TCCTCCAGCGCGAGGCTGTGCACGG
LOC_Os01g15709
OsAffx.11065.1.S1_x_at--429--8392Chr01:8833707..8833731 (25 bp)
GGCGCATCTTCAAGCCGGTGACGGC
LOC_Os01g15709
OsAffx.11065.1.S1_x_at--186--7372Chr01:8833724..8833748 (25 bp)
GTGACGGCGGAGTATCTTGGTCTCC
LOC_Os01g15709
OsAffx.11065.1.S1_x_at--1096--1192Chr01:8833734..8833758 (25 bp)
AGTATCTTGGTCTCCGGCCAGCGAG
LOC_Os01g15709
Target Sequence 
CGATGCGCAGCTACGTGGGCAACGTCACGACCTTCGCGGTCGCGGAGGCCACCATGGAGGAGATCCAGCGGAAGCCCCTG
GCGGAGGTGGCGTCCATGGCGCGCGACGCGATCGCCGCGCCGGCGTACGGCGAGCACTTCCAGGAGCTCGTGGACTGGGT
CGAGGAGCACAAGGCCGGGAAGCAGCGGTACATCGACACGGCGAGCGTCGGGCTGGGCAGCCCGGCGGTGAGCGTGACGG
CGTTCGCGTCGTTCGAGGTGGACACCGACTTCGGCCACGGCCACGCCGCGATGGCGCTGCCCACGTCGTCCTCCAGCGCG
AGGCTGTGCACGGGGTTCGTGCAGATCGCCGCGCGGCCTGGCGGCGGCGACGGGTCGTGGATCGCGAGCGCGCTGCTGTG
GCCGAGGCTGGCGGCGGCGCTCGAGTCCGACGAGCGGCTGGGGCGCATCTTCAAGCCGGTGACGGCGGAGTATCTTGGTC
TCCGGCCAGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11065.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis