Browse Element(s) Details


OsAffx.11095.1.S1_at

Description tigr:9629.m01782
TID=OsAffx.11095.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1835011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18300OsAffx.22253.2.S1_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18300OsAffx.22253.2.S1_s_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18310Os.57179.1.S1_at5/111+10285754..10286422hypothetical protein
LOC_Os01g18310OsAffx.21147.1.S1_at1/111+10285754..10286422hypothetical protein
LOC_Os01g18320Os.5439.1.S1_a_at11/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18320OsAffx.20253.1.S1_x_at2/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18330OsAffx.23288.1.S1_at11/111+10294491..10294817hypothetical protein
LOC_Os01g18340NANA1+10300522..10300989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18350OsAffx.11095.1.S1_at11/111+10304895..10305419hypothetical protein
LOC_Os01g18360Os.18169.2.S1_x_at11/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.2.S1_at10/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.1.S1_at8/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18370OsAffx.10738.2.S1_at10/111+10312861..10315287hypothetical protein
LOC_Os01g18370OsAffx.10738.1.S1_at8/111+10312861..10315287hypothetical protein
LOC_Os01g18390OsAffx.18764.2.S1_at11/111+10330316..10334290hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11095.1.S1_at--546--3591Chr01:10305243..10305267 (25 bp)
CATTGGAGGGAGAACGTGCGGCTGT
LOC_Os01g18350
OsAffx.11095.1.S1_at--798--7991Chr01:10305247..10305271 (25 bp)
GGAGGGAGAACGTGCGGCTGTTCCG
LOC_Os01g18350
OsAffx.11095.1.S1_at--846--10651Chr01:10305267..10305291 (25 bp)
TTCCGGGACAGCGTAGATGGTGACC
LOC_Os01g18350
OsAffx.11095.1.S1_at--498--4031Chr01:10305278..10305302 (25 bp)
CGTAGATGGTGACCGGAAGGCCGCT
LOC_Os01g18350
OsAffx.11095.1.S1_at--402--9952Chr01:10305305..10305329 (25 bp)
TACCCCACAAGTGATCGCCGGCAAC
LOC_Os01g18350
OsAffx.11095.1.S1_at--177--3632Chr01:10305332..10305356 (25 bp)
CTTCGGGATCAAGCTGCTACGACTA
LOC_Os01g18350
OsAffx.11095.1.S1_at--600--9432Chr01:10305334..10305358 (25 bp)
TCGGGATCAAGCTGCTACGACTACT
LOC_Os01g18350
OsAffx.11095.1.S1_at--26--3994Chr10:10015018..10015053 (24 bp)
CGGGATCAAGCTGCTACGACTACTT
NONE
OsAffx.11095.1.S1_at--964--9291Chr01:10305359..10305383 (25 bp)
TCCGCTACGCCGACGATCACTGGAG
LOC_Os01g18350
OsAffx.11095.1.S1_at--686--9951Chr01:10305364..10305388 (25 bp)
TACGCCGACGATCACTGGAGCAGTT
LOC_Os01g18350
OsAffx.11095.1.S1_at--402--1831Chr01:10305365..10305389 (25 bp)
ACGCCGACGATCACTGGAGCAGTTC
LOC_Os01g18350
Target Sequence 
CATTGGAGGGAGAACGTGCGGCTGTTCCGGGACAGCGTAGATGGTGACCGGAAGGCCGCTGCTACCCCACAAGTGATCGC
CGGCAACCCCTTCGGGATCAAGCTGCTACGACTACTTCCGCTACGCCGACGATCACTGGAGCAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis