Browse Element(s) Details


OsAffx.11138.1.S1_at

Description tigr:9629.m02013
TID=OsAffx.11138.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2111011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21060OsAffx.22902.1.S1_at11/111+11736261..11737574hypothetical protein
LOC_Os01g21060OsAffx.23316.1.S1_at11/111+11736261..11737574hypothetical protein
LOC_Os01g21070Os.28032.1.A1_at11/111+11739430..11742046Endoglucanase 1 precursor, putative, expressed
LOC_Os01g21080NANA1+11743886..11744494retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.28943.1.S1_x_at4/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.47130.4.A1_x_at2/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21100NANA1+11756877..11757779expressed protein
LOC_Os01g21110OsAffx.11138.1.S1_at11/111+11761478..11764389hypothetical protein
LOC_Os01g21110OsAffx.20956.1.S1_at1/111+11761478..11764389hypothetical protein
LOC_Os01g21110OsAffx.988.1.S1_at1/111+11761478..11764389hypothetical protein
LOC_Os01g21120Os.8031.1.S1_at10/111+11766391..11767460AP2 domain containing protein, expressed
LOC_Os01g21130NANA1+11774954..11775648expressed protein
LOC_Os01g21144Os.31860.1.S2_a_at11/111+11782721..11786296expressed protein
LOC_Os01g21144Os.31860.1.S1_at11/111+11782721..11786296expressed protein
LOC_Os01g21160OsAffx.23317.1.S1_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os01g21160Os.19003.1.S1_a_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11138.1.S1_at--492--3051Chr01:11763426..11763450 (25 bp)
AATCTTCACATCTGACGGGTTCAGC
LOC_Os01g21110
OsAffx.11138.1.S1_at--533--1911Chr01:11763440..11763464 (25 bp)
ACGGGTTCAGCCTTAGTCAGAGATT
LOC_Os01g21110
OsAffx.11138.1.S1_at--812--5291Chr01:11763499..11763765 (25 bp)
GAAGGCCCATTAGAGTCACAAATAG
LOC_Os01g21110
OsAffx.11138.1.S1_at--676--2531Chr01:11763766..11763790 (25 bp)
AACTCATCAAAATTACTCTCGTCCC
LOC_Os01g21110
OsAffx.11138.1.S1_at--454--7371Chr01:11764187..11764211 (25 bp)
GTGACCATTTGCTCCCGATAGAGGT
LOC_Os01g21110
OsAffx.11138.1.S1_at--837--1331Chr01:11764206..11764230 (25 bp)
AGAGGTCGCCTCTATCAGGTGCAAA
LOC_Os01g21110
OsAffx.11138.1.S1_at--785--7731Chr01:11764232..11764256 (25 bp)
GGTGGTCTGGCACAAGTGACAACTT
LOC_Os01g21110
OsAffx.11138.1.S1_at--8--2511Chr01:11764252..11764276 (25 bp)
AACTTACCTGTGATGGGTCTCGGCC
LOC_Os01g21110
OsAffx.11138.1.S1_at--919--431Chr01:11764286..11764310 (25 bp)
ATCTATTACGGCCTCCAGTTAAAGC
LOC_Os01g21110
OsAffx.11138.1.S1_at--1011--4271Chr01:11764297..11764321 (25 bp)
CCTCCAGTTAAAGCCGTCACATGTA
LOC_Os01g21110
OsAffx.11138.1.S1_at--738--751Chr01:11764317..11764341 (25 bp)
ATGTAAGGCCATCCGTGACGAGACA
LOC_Os01g21110
Target Sequence 
AATCTTCACATCTGACGGGTTCAGCCTTAGTCAGAGATTGGTCACCGATGACTTTGAGTCACCTGTGATAGGTGAAGGCC
CATTAGAGTCACAAATAGAACTCATCAAAATTACTCTCGTCCCCATCTCCAACCCCCTTCGCCCCGAGCCGAGCCGCTGC
CTCCACCCCAACTCCATAGCCTTCACCTTCCCCTTCGCCTCCCTAGCGCCGCCATCTCCGCCCCAACTCCCGCTCACCCG
CCGGCGCCGCCTCGTCCTCCACCTGCGCACACCCACCGGTGACCATTTGCTCCCGATAGAGGTCGCCTCTATCAGGTGCA
AATGGTGGTCTGGCACAAGTGACAACTTACCTGTGATGGGTCTCGGCCCATGGCCTCATCTATTACGGCCTCCAGTTAAA
GCCGTCACATGTAAGGCCATCCGTGACGAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis