Browse Element(s) Details


OsAffx.11196.1.S1_at

Description gb:NM_184031.1
DB_XREF= gi:34895189
GEN=B1051E10.36
TID=OsAffx.11196.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1051E10.36 (B1051E10.36), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g249301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24880Os.5342.2.S1_x_at10/111+13994996..14001917VIP2 protein, putative, expressed
LOC_Os01g24890NANA1+14003761..14006639transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24900OsAffx.23377.2.S1_at11/111+14008548..14009041hypothetical protein
LOC_Os01g24910OsAffx.7362.1.S1_x_at1/111+14009272..14011314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24920OsAffx.23378.1.S1_at5/111+14013845..14021269WGR domain containing protein, expressed
LOC_Os01g24930OsAffx.11196.1.S1_s_at11/111+14025570..14026564hypothetical protein
LOC_Os01g24930OsAffx.11196.2.S1_at3/111+14025570..14026564hypothetical protein
LOC_Os01g24930OsAffx.11196.1.S1_at1/111+14025570..14026564hypothetical protein
LOC_Os01g24940Os.24852.1.A1_at10/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940OsAffx.28592.1.S1_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940Os.35524.1.S3_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24950Os.27106.1.S1_at11/111+14042084..14046682Exocyst complex subunit Sec15-like family protein, expressed
LOC_Os01g24960OsAffx.22830.1.S1_at11/111+14050615..14051985dirigent, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11196.1.S1_at--541--491Chr01:14026838..14026862 (25 bp)
ATCGGAATCACGAGGCCGAGAGCCG
NONE
OsAffx.11196.1.S1_at--1040--4792Chr06:5286619..5286993 (25 bp)
GCTCGCCGGTGAGCCGCCATTGATG
NONE
OsAffx.11196.1.S1_at--974--7752Chr06:14410876..14410900 (25 bp)
GGTGAGCCGCCATTGATGGCCAACT
NONE
OsAffx.11196.1.S1_at--134--4452Chr06:14410872..14410892 (21 bp)
GCCATTGATGGCCAACTCCGGGCAG
NONE
OsAffx.11196.1.S1_at--942--10771Chr01:14026742..14026766 (25 bp)
TTGATGGCCAACTCCGGGCAGCTCT
NONE
OsAffx.11196.1.S1_at--1139--2531Chr01:14026733..14026757 (25 bp)
AACTCCGGGCAGCTCTCTCCGGTTG
NONE
OsAffx.11196.1.S1_at--790--9551Chr01:14026692..14026716 (25 bp)
TCTTTCTAATCTACCCCTTCCTGGA
NONE
OsAffx.11196.1.S1_at--434--3531Chr01:14026582..14026606 (25 bp)
CATGCCGCTGTGTCGCTGCCGTGTT
NONE
OsAffx.11196.1.S1_at--846--7451Chr01:14026573..14026597 (25 bp)
GTGTCGCTGCCGTGTTGCCGCTCTA
NONE
OsAffx.11196.1.S1_at--361--8811Chr01:14026561..14026585 (25 bp)
TGTTGCCGCTCTACCACGCAGATGG
NONE
OsAffx.11196.1.S1_at--92--1931Chr01:14026312..14026336 (25 bp)
ACAGGTGGGACCCATCGGTCGGCGC
LOC_Os01g24930
Target Sequence 
ATCGGAATCACGAGGCCGAGAGCCGCGTCGTCCGCCGGTCACTCGCCGCCATCTGCCGTCGGATCTCGCTGCCCTCCGCT
CGCCGGTGAGCCGCCATTGATGGCCAACTCCGGGCAGCTCTCTCCGGTTGTCCCTCTTCCCCTCTCTCTTTCTAATCTAC
CCCTTCCTGGAACCCATCCGCTCCTCGCTGTCGTTGTCGTTGCTGTCGTCGTCATCTCCTCCGCGCCGTCGGTGAGACCC
TCCTCCTCTTCCCTGCCATGCCGCTGTGTCGCTGCCGTGTTGCCGCTCTACCACGCAGATGGCCGCTGCCGGCAACCATC
GGGTAGCGTGCGTCGCTGCCTCCCAGTCAGGACAGCTGGCCGTCGGCCGCTGCGCCCTAGCCATCCGATCTACCCCTTGG
CAGATCGGGGTCGTCCACGTCCGTGCCGCGTGGCTGCCACGTCAGTGCCACGTGTACGCCACGTGGTACACTCGCCCCAG
TCATGTGGACTTGGTCCACCATGGGCCGAACCGCCTTGTGTCACTGACAGGTGGGACCCATCGGTCGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis