Browse Element(s) Details


OsAffx.11244.1.S1_at

Description tigr:9629.m02737
TID=OsAffx.11244.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2859011/11hypothetical protein
LOC_Os09g159801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28530Os.45173.1.S1_x_at3/111+16297336..16299567retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28540Os.27627.1.S1_at10/111+16302192..16307413expressed protein
LOC_Os01g28550NANA1+16310431..16312975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28560NANA1+16313444..16314411retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28570OsAffx.23432.1.S1_at11/111+16317441..16318181pentatricopeptide, putative
LOC_Os01g28580Os.26963.1.A1_at11/111+16319625..16323710expressed protein
LOC_Os01g28580OsAffx.19810.4.S1_s_at1/111+16319625..16323710expressed protein
LOC_Os01g28590OsAffx.11244.1.S1_at11/111+16324389..16324907hypothetical protein
LOC_Os01g28600OsAffx.23433.1.S1_at11/111+16327831..16330192Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g28610OsAffx.11245.1.S1_at10/111+16331527..16333544hypothetical protein
LOC_Os01g28620OsAffx.23434.2.S1_x_at11/111+16334793..16346615hypothetical protein
LOC_Os01g28630Os.52782.1.S1_at1/111+16347093..16348389retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11244.1.S1_at--1089--9131Chr01:16324424..16324448 (25 bp)
TGCGGATGTCGGCACTCAAGACAGC
LOC_Os01g28590
OsAffx.11244.1.S1_at--843--8231Chr01:16324434..16324458 (25 bp)
GGCACTCAAGACAGCACGCACGGTG
LOC_Os01g28590
OsAffx.11244.1.S1_at--1056--3471Chr01:16324465..16324489 (25 bp)
CAGGAAGGCGTTTGGCGTTGTGGTC
LOC_Os01g28590
OsAffx.11244.1.S1_at--85--2891Chr01:16324510..16324534 (25 bp)
AAGGGACACGGAGGCAGCGACCACA
LOC_Os01g28590
OsAffx.11244.1.S1_at--443--3332Chr10:10788144..10788168 (25 bp)
CACTGGTCGGGATGGCGCTCGGGAT
NONE
OsAffx.11244.1.S1_at--614--9451Chr01:16324687..16324711 (25 bp)
TCGGCTTCGCAAGCACGACAGAGGA
LOC_Os01g28590
OsAffx.11244.1.S1_at--403--5671Chr01:16324779..16324803 (25 bp)
GACTTCTTCATTGACAACGGCCCGA
LOC_Os01g28590
OsAffx.11244.1.S1_at--17--9551Chr01:16324783..16324807 (25 bp)
TCTTCATTGACAACGGCCCGATCGA
LOC_Os01g28590
OsAffx.11244.1.S1_at--208--3031Chr01:16324827..16324851 (25 bp)
AATCGCATCCATGACCCCAATGGAT
LOC_Os01g28590
OsAffx.11244.1.S1_at--721--8931Chr01:16324838..16324862 (25 bp)
TGACCCCAATGGATCTCCGATGCCG
LOC_Os01g28590
OsAffx.11244.1.S1_at--395--2973Chr10:10788393..10788415 (23 bp)
AATGGATCTCCGATGCCGTTGCCCC
NONE
Target Sequence 
TGCGGATGTCGGCACTCAAGACAGCACGCACGGTGCGGCGGCAGGAAGGCGTTTGGCGTTGTGGTCCGGAAGGGAGCAGC
GGCGGCAAGGGACACGGAGGCAGCGACCACACGGGACGCAGAGGCGGCGGCGGCGAACTCCGCCTCCAGCCGCCGCCTCC
GCCTCCGCCACTGGTCGGGATGGCGCTCGGGATGAGGGTGGTGGCTGGTGGCGGAGGAGGCTGGAGGCGGAGCTCGGGAT
GAGGCGAGGCTACGGCAGCGAGGTCGGCTTCGCAAGCACGACAGAGGAGGCGAGGCGACAATGGAAGAGCGTGGCTGCGG
AGGAAGCGAGGCGAGGCGGCGGCGGCGATGGCGTCGACTTCTTCATTGACAACGGCCCGATCGACCACTACGACGACCTC
GCCAATCGCATCCATGACCCCAATGGATCTCCGATGCCGTTGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis