Browse Element(s) Details


OsAffx.11248.1.S1_at

Description tigr:9629.m02766
TID=OsAffx.11248.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2883011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28780OsAffx.639.1.S1_at11/111+16449183..16449794hypothetical protein
LOC_Os01g28780OsAffx.2113.1.S1_at11/111+16449183..16449794hypothetical protein
LOC_Os01g28790Os.10162.1.S1_at11/111+16457381..16458225expressed protein
LOC_Os01g28790Os.46603.1.A1_x_at1/111+16457381..16458225expressed protein
LOC_Os01g28800OsAffx.23437.1.S1_at11/111+16461601..16462081retrotransposon, putative, centromere-specific
LOC_Os01g28810OsAffx.23438.1.S1_at9/111+16463090..16468000expressed protein
LOC_Os01g28820OsAffx.21110.1.S1_s_at11/111+16471696..16472100hypothetical protein
LOC_Os01g28830OsAffx.11248.1.S1_at11/111+16472672..16474341hypothetical protein
LOC_Os01g28830OsAffx.29962.1.S1_at1/111+16472672..16474341hypothetical protein
LOC_Os01g28840Os.33968.1.S1_at11/111+16478428..16480910C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g28840Os.5608.3.S1_x_at1/111+16478428..16480910C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g28850OsAffx.21108.1.S1_at5/111+16483844..16484083hypothetical protein
LOC_Os01g28850OsAffx.21108.1.S1_x_at4/111+16483844..16484083hypothetical protein
LOC_Os01g28870NANA1+16491635..16497790retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11248.1.S1_at--1005--9191Chr01:16473124..16473148 (25 bp)
TCCACGTCGGGCTCCAGGGACAGAG
LOC_Os01g28830
OsAffx.11248.1.S1_at--59--8811Chr01:16473063..16473087 (25 bp)
TGTTCGTGCGCTCCGCGTTGCTCTA
LOC_Os01g28830
OsAffx.11248.1.S1_at--20--4531Chr01:16473026..16473050 (25 bp)
GCCCTCCATATTCGTGGCCGACTTG
LOC_Os01g28830
OsAffx.11248.1.S1_at--448--7071Chr01:16472947..16472971 (25 bp)
GTCAACCACTCAAGGCGCTCGGGCG
LOC_Os01g28830
OsAffx.11248.1.S1_at--381--3312Chr06:28200938..28200959 (22 bp)
CACTCAAGGCGCTCGGGCGTCGTTC
NONE
OsAffx.11248.1.S1_at--1118--9312Chr06:28200954..28200979 (25 bp)
TCGTTCCGCCGGATGTGTCGGCCGA
NONE
OsAffx.11248.1.S1_at--113--10671Chr01:16472869..16472893 (25 bp)
TTCCTGGAGCAGCAAGCGCATCTAC
LOC_Os01g28830
OsAffx.11248.1.S1_at--1139--5151Chr01:16472858..16472882 (25 bp)
GCAAGCGCATCTACCCTGGCGTCGA
LOC_Os01g28830
OsAffx.11248.1.S1_at--773--10691Chr01:16472788..16472812 (25 bp)
TTGCCATCCTCTTCTATTCTCTATC
LOC_Os01g28830
OsAffx.11248.1.S1_at--784--10571Chr01:16472777..16472801 (25 bp)
TTCTATTCTCTATCGCCATCCTCTT
LOC_Os01g28830
OsAffx.11248.1.S1_at--887--3651Chr01:16472742..16472766 (25 bp)
CTTCATCGCCATCGCGGAAGGAGGC
LOC_Os01g28830
Target Sequence 
TCCACGTCGGGCTCCAGGGACAGAGCGGGGAAGCCGCTGCCACCGCCCCAGCCGCAGAGCTTGTTCGTGCGCTCCGCGTT
GCTCTACTACCCGCACACGCCCTCCATATTCGTGGCCGACTTGCCCCTGCCATGTGGGCTTCCCGTGGCGGTGGCGCTGG
ACATGTGCCTGCGCCCCGTCAACCACTCAAGGCGCTCGGGCGTCGTTCCGCCGGATGTGTCGGCCGAGGCGGAGGGCGAC
GACCTCTGTGATGTGTTCCTGGAGCAGCAAGCGCATCTACCCTGGCGTCGACCCCATCTGCCCGTGTCGCCTCTCGCCTC
CTCCTCCCCCCACCCATTGCCATCCTCTTCTATTCTCTATCGCCATCCTCTTCTCTTCTCTTCTTCATCGCCATCGCGGA
AGGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis