Browse Element(s) Details


OsAffx.11280.1.S1_at

Description tigr:9629.m02998
TID=OsAffx.11280.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3215011/11hypothetical protein
LOC_Os04g155204/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32110NANA1+17903209..17906304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32120Os.53456.1.S1_at11/111+17908061..17908950EF hand family protein, expressed
LOC_Os01g32130Os.1423.1.S1_at11/111+17910565..17913133expressed protein
LOC_Os01g32140OsAffx.23469.1.S1_x_at9/111+17916024..17917040hypothetical protein
LOC_Os01g32140Os.47086.1.S1_at1/111+17916024..17917040hypothetical protein
LOC_Os01g32150OsAffx.11280.1.S1_at11/111+17925775..17926723hypothetical protein
LOC_Os01g32160OsAffx.23470.1.S1_at11/111+17927385..17928941hypothetical protein
LOC_Os01g32170Os.26824.1.S1_at11/111+17932018..17934421pentatricopeptide, putative, expressed
LOC_Os01g32184OsAffx.23471.1.S1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.53528.1.A1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184OsAffx.2130.1.S1_at10/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.47558.1.S1_at1/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11280.1.S1_at--448--4191Chr01:17926177..17926589 (25 bp)
CCCGCCGGAGGTGGAATCAAACAAG
LOC_Os01g32150
OsAffx.11280.1.S1_at--626--8153Chr12:21399318..21399339 (22 bp)
GGAAAGGCACTAAGCTTCAAAGCAT
NONE
OsAffx.11280.1.S1_at--139--1733Chr12:21399290..21399314 (25 bp)
ACCGTTGAAATGTCCAGAACTCCAG
NONE
OsAffx.11280.1.S1_at--518--5153Chr12:21399254..21399278 (25 bp)
GCAACCCACCCAACAACAGGAAGTA
NONE
OsAffx.11280.1.S1_at--572--1052Chr10:22198070..22198094 (25 bp)
AGGTGGTTACTAATGGTGGCTTCGC
NONE
OsAffx.11280.1.S1_at--926--7531Chr01:17926005..17926029 (25 bp)
GTGGCTTCGCCATCAGGGCACTGGA
LOC_Os01g32150
OsAffx.11280.1.S1_at--380--5853Chr12:21399153..21399177 (25 bp)
GACCATCTCCCTTGGTGCCGAGGAA
NONE
OsAffx.11280.1.S1_at--525--8352Chr12:21399098..21399122 (25 bp)
GGCGGCGACATTGGCCAGCCTTCTG
NONE
OsAffx.11280.1.S1_at--188--1692Chr12:21399082..21399106 (25 bp)
AGCCTTCTGCGCGTCGAGTACTCGA
NONE
OsAffx.11280.1.S1_at--224--6093Chr12:21399067..21399091 (25 bp)
GAGTACTCGAGTCGAGCCTCCACAG
NONE
OsAffx.11280.1.S1_at--494--5891Chr01:17925813..17925837 (25 bp)
GAGCGGTATCTCTACATCGTTGTCA
LOC_Os01g32150
Target Sequence 
CCCGCCGGAGGTGGAATCAAACAAGCATGTTGATCTAAGGAAAGGCACTAAGCTTCAAAGCATACCGTTGAAATGTCCAG
AACTCCAGATCCCCTGGAAGCAACCCACCCAACAACAGGAAGTAAGCCAAACAGGGAAGACAGGAGAGGAGGTTAGCAGG
TGGTTACTAATGGTGGCTTCGCCATCAGGGCACTGGACCATCTCCCTTGGTGCCGAGGAAGGCGTGGAGGATGCGTGCCA
CGGCCTCGCCGGCGGCGACATTGGCCAGCCTTCTGCGCGTCGAGTACTCGAGTCGAGCCTCCACAGCGCCGGCTCGTCGT
GCTACGTGCGCACGGGCGACTGTGTCGTGGTGATCAGGGGAGCAGAGCGGTATCTCTACATCGTTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis