Browse Element(s) Details


OsAffx.11362.1.S1_at

Description gb:NM_193463.1
DB_XREF= gi:34914009
GEN=OJ1014_G12.20
TID=OsAffx.11362.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) replication protein-like (OJ1014_G12.20), mRNA.
PROD=replication protein-like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3758010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37560Os.10017.1.S1_at10/111+21314607..21319239DnaJ domain containing protein, expressed
LOC_Os01g37570Os.24831.3.S1_x_at10/111+21330455..21332810retrotransposon protein, putative, unclassified
LOC_Os01g37570Os.24831.3.S1_s_at7/111+21330455..21332810retrotransposon protein, putative, unclassified
LOC_Os01g37570Os.24831.1.S1_x_at6/111+21330455..21332810retrotransposon protein, putative, unclassified
LOC_Os01g37570Os.23706.1.A1_x_at1/111+21330455..21332810retrotransposon protein, putative, unclassified
LOC_Os01g37580OsAffx.11362.2.S1_x_at11/111+21337410..21349541hypothetical protein
LOC_Os01g37580OsAffx.11362.1.S1_at10/111+21337410..21349541hypothetical protein
LOC_Os01g37580OsAffx.16381.1.S1_x_at1/111+21337410..21349541hypothetical protein
LOC_Os01g37590Os.45923.1.S1_at11/111+21365653..21367927Major Facilitator Superfamily protein, expressed
LOC_Os01g37600OsAffx.21227.2.S1_at11/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37600OsAffx.21227.1.S1_x_at10/111+21368717..21374088Agenet domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11362.1.S1_at--74--1251Chr01:21348783..21348981 (25 bp)
AGTTGTCAAGACATTCACTTTCCGA
LOC_Os01g37580
OsAffx.11362.1.S1_at--576--2751NONE
AAGACATTCACTTTCCGAACAACAA
NONE
OsAffx.11362.1.S1_at--452--10511Chr01:21348970..21348994 (25 bp)
TTCACTTTCCGAACAACAAAGCTTG
LOC_Os01g37580
OsAffx.11362.1.S1_at--938--3271Chr01:21348986..21349010 (25 bp)
CAAAGCTTGAATTTGGACCCTTCGA
LOC_Os01g37580
OsAffx.11362.1.S1_at--1076--5211Chr01:21348994..21349018 (25 bp)
GAATTTGGACCCTTCGAAATGAATT
LOC_Os01g37580
OsAffx.11362.1.S1_at--316--8991Chr01:21349013..21349037 (25 bp)
TGAATTTCGGCAGCACTGCAAGTCC
LOC_Os01g37580
OsAffx.11362.1.S1_at--672--1971Chr01:21349027..21349051 (25 bp)
ACTGCAAGTCCATTGCGCCAGAGAG
LOC_Os01g37580
OsAffx.11362.1.S1_at--97--7271Chr01:21349034..21349058 (25 bp)
GTCCATTGCGCCAGAGAGTGATACT
LOC_Os01g37580
OsAffx.11362.1.S1_at--434--2231Chr01:21349091..21349115 (25 bp)
ACAAGGAAGCTATATCAGACCTGCT
LOC_Os01g37580
OsAffx.11362.1.S1_at--920--4871Chr01:21349099..21349123 (25 bp)
GCTATATCAGACCTGCTTGACAACA
LOC_Os01g37580
OsAffx.11362.1.S1_at--455--9071Chr01:21349112..21349136 (25 bp)
TGCTTGACAACAACTGCAGAATTGA
LOC_Os01g37580
Target Sequence 
AGTTGTCAAGACATTCACTTTCCGAACAACAAAGCTTGAATTTGGACCCTTCGAAATGAATTTCGGCAGCACTGCAAGTC
CATTGCGCCAGAGAGTGATACTGGCATTAGAAGGGGTTCCACCTGAATCATGGAACAAGGAAGCTATATCAGACCTGCTT
GACAACAACTGCAGAATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis