Browse Element(s) Details


OsAffx.11409.1.S1_at

Description tigr:9629.m03868
TID=OsAffx.11409.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4052011/11hypothetical protein
LOC_Os02g433901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g163501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40480OsAffx.30059.1.S1_x_at11/111+23195394..23198636C2 domain-containing protein, putative, expressed
LOC_Os01g40480OsAffx.30059.2.S1_x_at3/111+23195394..23198636C2 domain-containing protein, putative, expressed
LOC_Os01g40499Os.41415.2.S1_x_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.41415.1.S1_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.21411.1.S1_at9/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.11410.1.S1_x_at4/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.49232.1.S1_x_at3/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.18435.1.S1_x_at1/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40520OsAffx.11409.1.S1_at11/111+23222929..23223669hypothetical protein
LOC_Os01g40530NANA1+23224329..23225691hypothetical protein
LOC_Os01g40540OsAffx.23609.1.S1_at8/111+23226677..23227165lectin receptor-type protein kinase, putative
LOC_Os01g40550Os.20437.1.S1_at7/111+23227915..23229110Hsp20/alpha crystallin family protein, expressed
LOC_Os01g40560OsAffx.21410.1.S1_x_at11/111+23233291..23234659SPFH domain/Band 7 family protein
LOC_Os01g40570Os.8309.1.S1_at10/111+23235138..23237522Outer plastidial membrane protein porin, putative, expressed
LOC_Os01g40580Os.31431.1.S1_at11/111+23241450..23243021hypersensitive-induced response protein, putative, expressed
LOC_Os01g40590Os.5667.1.S1_at11/111+23245301..23250709Protein kinase APK1A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11409.1.S1_at--296--1551Chr01:23222973..23222997 (25 bp)
AGCTTTGCTCCTTGCCGTTTTTGGG
LOC_Os01g40520
OsAffx.11409.1.S1_at--1023--3551Chr01:23223046..23223070 (25 bp)
CATCTTGGACGCACGCGAGCTGTGG
LOC_Os01g40520
OsAffx.11409.1.S1_at--870--5091Chr01:23223056..23223080 (25 bp)
GCACGCGAGCTGTGGCGCAGAGGTG
LOC_Os01g40520
OsAffx.11409.1.S1_at--229--3131Chr01:23223198..23223222 (25 bp)
AATTCAAAGGCGGAGGCAGGAATCG
LOC_Os01g40520
OsAffx.11409.1.S1_at--1145--911Chr01:23223211..23223547 (25 bp)
AGGCAGGAATCGGTGCCGGAACATA
LOC_Os01g40520
OsAffx.11409.1.S1_at--158--2691Chr01:23223218..23223554 (25 bp)
AATCGGTGCCGGAACATAGGGTGGA
LOC_Os01g40520
OsAffx.11409.1.S1_at--1162--8511Chr01:23223551..23223575 (25 bp)
TGGAGTCAAGGAACTGGTTCAAGGA
LOC_Os01g40520
OsAffx.11409.1.S1_at--231--3911Chr01:23223564..23223588 (25 bp)
CTGGTTCAAGGAAGACTCGGATATT
LOC_Os01g40520
OsAffx.11409.1.S1_at--455--7891Chr01:23223566..23223590 (25 bp)
GGTTCAAGGAAGACTCGGATATTTT
LOC_Os01g40520
OsAffx.11409.1.S1_at--292--953Chr07:9548588..9548607 (20 bp)
AGGAAGACTCGGATATTTTGGAATC
LOC_Os07g16350
OsAffx.11409.1.S1_at--557--10211Chr01:23223585..23223609 (25 bp)
TATTTTGGAATCGAGACAAGTATTT
LOC_Os01g40520
Target Sequence 
AGCTTTGCTCCTTGCCGTTTTTGGGCGAGCTGAGGGAGGAGAGAGCGCGTGGGAGAGAGAGGCGCTGCCTCCGCATCTTG
GACGCACGCGAGCTGTGGCGCAGAGGTGGGTGCGGCGGCAGAGTGGGCGCGGGCGGCTGCGCGGCGCAGGCGGGCCAGGG
CGAACGGCGACCGAGGGCGGTCGGCCACCACGCGGGAGCGCGCGCGCGGAGCAAGGGCGCGGCGGAATTCAAAGGCGGAG
GCAGGAATCGGTGCCGGAACATAGGGTGGAGTCAAGGAACTGGTTCAAGGAAGACTCGGATATTTTGGAATCGAGACAAG
TATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis