Browse Element(s) Details


OsAffx.11528.1.S1_at

Description tigr:9629.m04767
TID=OsAffx.11528.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=plant-specific FAD-dependent oxidoreductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4936011/11FAD-binding domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49320Os.17479.1.S1_at11/111+28681672..28682915Acidic endochitinase precursor, putative, expressed
LOC_Os01g49330Os.35041.2.S1_x_at11/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49330Os.35041.1.S1_at10/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49340Os.32007.1.S1_x_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.54637.1.S1_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.32007.1.S1_at10/111+28694783..28697378expressed protein
LOC_Os01g49350Os.33804.2.S1_x_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.33804.1.S1_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.25168.2.A1_at3/111+28697767..28701355expressed protein
LOC_Os01g49350OsAffx.6448.1.S1_at1/111+28697767..28701355expressed protein
LOC_Os01g49360OsAffx.11528.1.S1_at11/111+28703433..28706534FAD-binding domain-containing protein, putative, expressed
LOC_Os01g49370OsAffx.24369.13.S1_s_at11/111+28707937..28710487expressed protein
LOC_Os01g49380Os.50385.1.S1_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.50385.1.S1_s_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.45956.1.S1_x_at9/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.7467.1.S1_at1/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49390OsAffx.11529.1.S1_at11/111+28730450..28731541IPP transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11528.1.S1_at--911--6271Chr01:28703982..28704006 (25 bp)
GATGTTCTCGCCTGCGGCGAGGTTC
LOC_Os01g49360
OsAffx.11528.1.S1_at--923--5751Chr01:28703924..28703948 (25 bp)
GACGTCGACCCGGACAGCATGTGCG
LOC_Os01g49360
OsAffx.11528.1.S1_at--1150--9251Chr01:28703878..28703902 (25 bp)
TCCTCGTCAGATTCGTGAAGGCGTC
LOC_Os01g49360
OsAffx.11528.1.S1_at--615--4011Chr01:28703857..28703881 (25 bp)
CGTCGGAGGCATACCTGGGCCAGCC
LOC_Os01g49360
OsAffx.11528.1.S1_at--200--7731Chr01:28703820..28703844 (25 bp)
GGTGGTGGACTTCAACTACTACCGC
LOC_Os01g49360
OsAffx.11528.1.S1_at--369--5691Chr01:28703813..28703837 (25 bp)
GACTTCAACTACTACCGCGCGTCGG
LOC_Os01g49360
OsAffx.11528.1.S1_at--487--4211Chr01:28703711..28703735 (25 bp)
CCGCACTGGGCCAAGAACAGGCTGG
LOC_Os01g49360
OsAffx.11528.1.S1_at--744--8151Chr01:28703666..28703690 (25 bp)
GGCAAGTACCCGAGCTGGGACAAGT
LOC_Os01g49360
OsAffx.11528.1.S1_at--471--1811Chr01:28703659..28703683 (25 bp)
ACCCGAGCTGGGACAAGTTCGGCGC
LOC_Os01g49360
OsAffx.11528.1.S1_at--300--7171Chr01:28703519..28703543 (25 bp)
GTCTGCTCCGAGGACAGGCACTGCA
LOC_Os01g49360
OsAffx.11528.1.S1_at--341--4791Chr01:28703463..28703487 (25 bp)
GCTCGTTTATTCAGAGGCCAGGGTC
LOC_Os01g49360
Target Sequence 
GATGTTCTCGCCTGCGGCGAGGTTCCGCGACTTCGTCCTCGACGTCAAGCGGCTGCGCGACGTCGACCCGGACAGCATGT
GCGGCGTCGACGCGTACAACGGCCTCCTCGTCAGATTCGTGAAGGCGTCGGAGGCATACCTGGGCCAGCCGGAGGACACC
GTGGTGGTGGACTTCAACTACTACCGCGCGTCGGACGGGTCGTCGCCGCGGCTGAGCCAGGACGTGTGGGAGGAGGTGGA
GCAGCTGGCGTTCGTCAAGCACGGGGCGCGCCCGCACTGGGCCAAGAACAGGCTGGCGGCGTTCCGGGGCGTGCGGGGCA
AGTACCCGAGCTGGGACAAGTTCGGCGCGGCGAAGCGGCAGCTCGACCCGCGGGGGCTGTTCGACAGCCGGTGGTCCGAC
GAGGTCGTCGGCGGGGAGGAGCAGCTGCCCAAGGCCGACGGCTGCGCGCTGGAGGGCCGCTGCGTCTGCTCCGAGGACAG
GCACTGCAGCCCGAGCAAGGGGTACTACTGCAGACCGGGGCTCGTTTATTCAGAGGCCAGGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis