Browse Element(s) Details


OsAffx.11549.1.S1_at

Description tigr:9629.m04900
TID=OsAffx.11549.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5063011/11hypothetical protein
LOC_Os08g210601/11Zinc knuckle family protein
LOC_Os05g160801/11Zinc knuckle family protein
LOC_Os04g339101/11hypothetical protein
LOC_Os02g186001/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50616Os.26967.1.S2_at11/111+29393504..29399043CRAL/TRIO, N-terminus family protein, expressed
LOC_Os01g50616Os.26967.1.S1_a_at11/111+29393504..29399043CRAL/TRIO, N-terminus family protein, expressed
LOC_Os01g50622Os.15428.1.S1_at10/111+29399634..29403172wound-responsive protein, putative, expressed
LOC_Os01g50630OsAffx.11549.1.S1_at11/111+29409886..29410506hypothetical protein
LOC_Os01g50630Os.31535.1.A1_at1/111+29409886..29410506hypothetical protein
LOC_Os01g50640NANA1+29411804..29417732retrotransposon protein, putative, unclassified
LOC_Os01g50650Os.28943.1.S1_x_at2/111+29418119..29421610retrotransposon protein, putative, unclassified
LOC_Os01g50660Os.37083.2.S1_at1/111+29422547..29422873retrotransposon protein, putative, unclassified
LOC_Os01g50660Os.47130.4.A1_x_at1/111+29422547..29422873retrotransposon protein, putative, unclassified
LOC_Os01g50670OsAffx.21478.1.S1_at11/111+29427498..29428169transposon protein, putative, unclassified
LOC_Os01g50680OsAffx.23738.1.S1_x_at11/111+29431731..29435982PA domain containing protein, expressed
LOC_Os01g50680OsAffx.17117.1.S1_x_at1/111+29431731..29435982PA domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11549.1.S1_at--863--4531Chr01:29410437..29410461 (25 bp)
GCCCGCGAGTTTCCGTCAAGATTGT
LOC_Os01g50630
OsAffx.11549.1.S1_at--991--3212Chr10:16821571..16821590 (20 bp)
CAAGATTGTGGATTGACCCGGGCAA
NONE
OsAffx.11549.1.S1_at--1065--111Chr12:17482094..17482117 (24 bp)
ATTGTGGATTGACCCGGGCAAGTTT
NONE
OsAffx.11549.1.S1_at--475--5811Chr01:29410407..29410431 (25 bp)
GACCCGGGCAAGTTTGTGAATGTAT
LOC_Os01g50630
OsAffx.11549.1.S1_at--985--3211Chr01:29410399..29410423 (25 bp)
CAAGTTTGTGAATGTATTCCTCACC
LOC_Os01g50630
OsAffx.11549.1.S1_at--593--5171Chr01:29409996..29410395 (25 bp)
GCAAGGAAACAAGTATTTTCTCAGT
LOC_Os01g50630
OsAffx.11549.1.S1_at--674--10371Chr01:29409981..29410005 (25 bp)
TTTTCTCAGTATTTCCAGTACCCGG
LOC_Os01g50630
OsAffx.11549.1.S1_at--1116--9211Chr01:29409968..29409992 (25 bp)
TCCAGTACCCGGAAGTTCCTGTTCT
LOC_Os01g50630
OsAffx.11549.1.S1_at--450--8171Chr01:29409935..29409959 (25 bp)
GGAAGTTCCGAGCTGCCTATAGCTA
LOC_Os01g50630
OsAffx.11549.1.S1_at--601--4071Chr01:29409927..29409951 (25 bp)
CGAGCTGCCTATAGCTACCAGGAAG
LOC_Os01g50630
OsAffx.11549.1.S1_at--182--9011Chr01:29409922..29409946 (25 bp)
TGCCTATAGCTACCAGGAAGTTCCG
LOC_Os01g50630
Target Sequence 
GCCCGCGAGTTTCCGTCAAGATTGTGGATTGACCCGGGCAAGTTTGTGAATGTATTCCTCACCTCCGCAAGGAAACAAGT
ATTTTCTCAGTATTTCCAGTACCCGGAAGTTCCTGTTCTTGAACTCCGGAAGTTCCGAGCTGCCTATAGCTACCAGGAAG
TTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis