Browse Element(s) Details


OsAffx.11567.1.S1_s_at

Description gb:NM_191761.1
DB_XREF= gi:34910605
GEN=P0683B11.12
TID=OsAffx.11567.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0683B11.12 (P0683B11.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5188011/11hypothetical protein
LOC_Os06g483301/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51830NANA1+30124394..30127416hypothetical protein
LOC_Os01g51840Os.48857.1.S1_a_at11/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.53729.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.7994.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51850OsAffx.2305.2.S1_at11/111+30137820..30139315hypothetical protein
LOC_Os01g51860Os.15991.1.S1_at11/111+30143670..30146584violaxanthin de-epoxidase, putative, expressed
LOC_Os01g51860OsAffx.13678.2.S1_at1/111+30143670..30146584violaxanthin de-epoxidase, putative, expressed
LOC_Os01g51870OsAffx.23754.1.S1_x_at11/111+30147576..30148730embryo-abundant protein, putative, expressed
LOC_Os01g51870Os.33184.1.S1_at11/111+30147576..30148730embryo-abundant protein, putative, expressed
LOC_Os01g51880OsAffx.11567.1.S1_s_at11/111+30149180..30150624hypothetical protein
LOC_Os01g51890Os.11023.1.S2_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51890Os.11023.1.S1_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51904Os.50521.1.S1_at2/111+30166253..30168706hypothetical protein
LOC_Os01g51920Os.13835.2.S2_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S3_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S1_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11567.1.S1_s_at--1151--7631Chr01:30150304..30150328 (25 bp)
GGGAGTACATCAACCGCGCTGTGGG
LOC_Os01g51880
OsAffx.11567.1.S1_s_at--333--9431Chr01:30150211..30150235 (25 bp)
TCGGATACCTCGTCGTGTTGTCCCG
LOC_Os01g51880
OsAffx.11567.1.S1_s_at--630--9411Chr01:30150202..30150226 (25 bp)
TCGTCGTGTTGTCCCGCCTCGAGGA
LOC_Os01g51880
OsAffx.11567.1.S1_s_at--764--9311Chr01:30150140..30150164 (25 bp)
TCCCAGTGGCTCAGCTTCGCCGAGT
LOC_Os01g51880
OsAffx.11567.1.S1_s_at--275--7231Chr01:30150011..30150035 (25 bp)
GTCGCTGCCTTGGACATTCTTGAGG
LOC_Os01g51880
OsAffx.11567.1.S1_s_at--854--111Chr01:30149996..30150020 (25 bp)
ATTCTTGAGGACGAGTTCTGTCGCC
LOC_Os01g51880
OsAffx.11567.1.S1_s_at--978--1211Chr01:30149983..30150007 (25 bp)
AGTTCTGTCGCCTTCTCAAGGAACA
LOC_Os01g51880
OsAffx.11567.1.S1_s_at--39--10591Chr01:30149971..30149995 (25 bp)
TTCTCAAGGAACACTCAGCTTCGCT
LOC_Os01g51880
OsAffx.11567.1.S1_s_at--651--3751Chr01:30149958..30149982 (25 bp)
CTCAGCTTCGCTCGCCATGAAAGAA
LOC_Os01g51880
OsAffx.11567.1.S1_s_at--423--4792Chr06:29231024..29231045 (22 bp)
GCTCGCCATGAAAGAACCCAACTAT
LOC_Os06g48330
OsAffx.11567.1.S1_s_at--607--8951Chr01:30149941..30149965 (25 bp)
TGAAAGAACCCAACTATAGCCGGCC
LOC_Os01g51880
Target Sequence 
GGGAGTACATCAACCGCGCTGTGGGGCCGGCCGTCGCCGTGCGCGGCCTCGAGCCGCCGTTCCTCGCGGCCTCCGCCGTC
GCCGACGACCTCCTCGGATACCTCGTCGTGTTGTCCCGCCTCGAGGAGGTGCTCCACTTCCTCTCCGACAACTGCGGCAT
CGCCTCCCAGTGGCTCAGCTTCGCCGAGTACCTCGGGGACCGCAGCCTCGCCGACCCCTGCTTCGTGTCCGACCTCGCCG
AGGTGCTCTCTCACCTCAAGACCCCCTCCGCAAACCTGGACGGCGGCCTCCTCGTCGCTGCCTTGGACATTCTTGAGGAC
GAGTTCTGTCGCCTTCTCAAGGAACACTCAGCTTCGCTCGCCATGAAAGAACCCAACTATAGCCGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11567.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis