Browse Element(s) Details


OsAffx.11582.1.S1_at

Description tigr:9629.m05173
TID=OsAffx.11582.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5319011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53140Os.6679.1.S1_at10/111+30860457..30863593expressed protein
LOC_Os01g53140Os.8190.2.S1_x_at2/111+30860457..30863593expressed protein
LOC_Os01g53150Os.18863.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.52504.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.49481.1.S1_at1/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53160Os.55598.1.S1_at11/111+30869648..30870902uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g53170OsAffx.943.1.S1_at11/111+30878472..30880838retrotransposon protein, putative, unclassified
LOC_Os01g53180NANA1+30881193..30881558hypothetical protein
LOC_Os01g53190OsAffx.11582.1.S1_at11/111+30882178..30884632hypothetical protein
LOC_Os01g53200OsAffx.23770.1.S1_at11/111+30888324..30891284flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g53210OsAffx.11583.1.S1_at11/111+30900983..30903135expressed protein
LOC_Os01g53220Os.35681.1.S1_at11/111+30909333..30910542HSF-type DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11582.1.S1_at--1010--4911Chr01:30882214..30882238 (25 bp)
GCTTCCAGTGGTGGATCTTCTTCCA
LOC_Os01g53190
OsAffx.11582.1.S1_at--329--1791Chr01:30882265..30882289 (25 bp)
ACCGTCGCTGTCAAATCACATGTCC
LOC_Os01g53190
OsAffx.11582.1.S1_at--514--751Chr01:30882284..30882308 (25 bp)
ATGTCCCCATCACTCTAGAAAACAC
LOC_Os01g53190
OsAffx.11582.1.S1_at--927--1531Chr01:30882616..30882640 (25 bp)
AGCTTATAAATCACCTCTACTTCAA
LOC_Os01g53190
OsAffx.11582.1.S1_at--817--8831Chr01:30883058..30883077 (20 bp)
TGATAAGCCAAGTGCACTGTGCCAT
LOC_Os01g53190
OsAffx.11582.1.S1_at--1064--4711Chr01:30884255..30884279 (25 bp)
GCTGGATAGCGGACCCTTGCATGAA
LOC_Os01g53190
OsAffx.11582.1.S1_at--841--751Chr01:30884303..30884327 (25 bp)
ATGTCTTCTCTGACCAGACCTTAGA
LOC_Os01g53190
OsAffx.11582.1.S1_at--1044--1131Chr01:30884318..30884342 (25 bp)
AGACCTTAGAAACCATCGGCCACAT
LOC_Os01g53190
OsAffx.11582.1.S1_at--36--4411Chr01:30884336..30884360 (25 bp)
GCCACATCTTAGTCTTTCCCGGAAT
LOC_Os01g53190
OsAffx.11582.1.S1_at--373--10651Chr01:30884351..30884535 (25 bp)
TTCCCGGAATCCCTGCAGGAGAGAA
LOC_Os01g53190
OsAffx.11582.1.S1_at--760--8591Chr01:30884561..30884585 (25 bp)
TGGTGCCAACTATCTATGCGGAGGA
LOC_Os01g53190
Target Sequence 
GCTTCCAGTGGTGGATCTTCTTCCACCACCGAGTTCCTTCACCCCTATGCCACCGTCGCTGTCAAATCACATGTCCCCAT
CACTCTAGAAAACACACTTAATGCTAGTGAGGGATCATGCAGAATGCCAATAGCTTATAAATCACCTCTACTTCAAAATG
TTCAAGAACGATGTTCTAAGTTTGATGATACTATGATAAGCCAAGTGCACTGTGCCATGGGCAATTTGGCCATATTGAAA
AGTATAATGGAGGTTAACGATGAGGAGTGCTGGATAGCGGACCCTTGCATGAAGAGGCTGCCTAATCGAGGAAACTATGT
CTTCTCTGACCAGACCTTAGAAACCATCGGCCACATCTTAGTCTTTCCCGGAATCCCTGCAGGAGAGAAATACTTCAACC
AACTCAGCAAGCCCTGGTGCCAACTATCTATGCGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis