Browse Element(s) Details


OsAffx.11593.2.S1_s_at

Description tigr:9629.m05242
TID=OsAffx.11593.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5386011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53810OsAffx.23781.1.S1_x_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810OsAffx.23781.1.S1_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.2.S1_x_at6/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.1.S1_x_at5/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53820NANA1+31266539..31267841expressed protein
LOC_Os01g53830NANA1+31273196..31274451transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g53840Os.2000.2.S1_x_at10/111+31276227..31281586protein kinase family protein, putative, expressed
LOC_Os01g53850OsAffx.11592.2.S1_at11/111+31282309..31283241hypothetical protein
LOC_Os01g53860OsAffx.11593.2.S1_s_at11/111+31288752..31292062expressed protein
LOC_Os01g53870OsAffx.24046.1.S1_at11/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.2.S1_x_at4/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.7.S1_x_at3/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.3.S1_x_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870Os.53053.1.S1_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53880Os.11608.1.S1_at11/111+31302613..31306303AUX/IAA family protein, expressed
LOC_Os01g53890Os.6199.2.A1_at11/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53890Os.6199.3.S1_at5/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11593.2.S1_s_at--632--4491Chr01:31289235..31289259 (25 bp)
GCCGGTACCACCTACAAACTGAATG
LOC_Os01g53860
OsAffx.11593.2.S1_s_at--495--5631Chr01:31290492..31290516 (25 bp)
GACACTTTGGTCTATGGAGAAGCCG
LOC_Os01g53860
OsAffx.11593.2.S1_s_at--938--2131Chr01:31291622..31291646 (25 bp)
ACAGTATTCACGGAGGCGAGCTCTA
LOC_Os01g53860
OsAffx.11593.2.S1_s_at--1028--891Chr01:31291635..31291659 (25 bp)
AGGCGAGCTCTAACCGCACGAACGG
LOC_Os01g53860
OsAffx.11593.2.S1_s_at--1088--6151Chr01:31291691..31291715 (25 bp)
GAGGATAAACCCGTGCTCGACGTCG
LOC_Os01g53860
OsAffx.11593.2.S1_s_at--749--5411Chr01:31291718..31291742 (25 bp)
GAAGCCCGAAGTTACAAGCGACACC
LOC_Os01g53860
OsAffx.11593.2.S1_s_at--946--2891Chr01:31291790..31291814 (25 bp)
AAGGTCCTCTCACGATCAACCAGAG
LOC_Os01g53860
OsAffx.11593.2.S1_s_at--1014--2251Chr01:31291883..31291907 (25 bp)
AAGACCGGCCTTGACGGAAGCCGAG
LOC_Os01g53860
OsAffx.11593.2.S1_s_at--1091--5951Chr01:31291905..31291929 (25 bp)
GAGAAGGCCCTCGTCAACGTACAAG
LOC_Os01g53860
OsAffx.11593.2.S1_s_at--926--4451Chr01:31291941..31291965 (25 bp)
GCCCGGGAGTACTCGCTGAGGTTCA
LOC_Os01g53860
OsAffx.11593.2.S1_s_at--895--1011Chr01:31291959..31291983 (25 bp)
AGGTTCAGGTACTCAGCGGCAACGC
LOC_Os01g53860
Target Sequence 
GCCGGTACCACCTACAAACTGAATGGTACCTGGAGACACTTTGGTCTATGGAGAAGCCGAATAGGGAAGAGGAAGAGGAA
GAAGATCGATCACGGCGGAAGGGGCTGGCGACAACGGCTCGCGTCCCGTCCAAGGTGAGGAGGACAGTATTCACGGAGGC
GAGCTCTAACCGCACGAACGGAGCCCCGATCGACCAGGCGCAGGCGCGGCCGGAGGATAAACCCGTGCTCGACGTCGCCG
AAGCCCGAAGTTACAAGCGACACCCCCGGCTAGCCATGCTCGGCGCCACGGCGCCGTGGTTCATCGCCCGCAAGGTCCTC
TCACGATCAACCAGAGGCCAGAGCCGGCTGCAGCTCTCCATCGTCGTCAAGGGCAAGGACATGGCCCCGCGCCTGCTCAT
CACCAAGACCGGCCTTGACGGAAGCCGAGAAGGCCCTCGTCAACGTACAAGCGCGGCCGGGAGCCCGGGAGTACTCGCTG
AGGTTCAGGTACTCAGCGGCAACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11593.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis