Browse Element(s) Details


OsAffx.11679.2.A1_at

Description tigr:9629.m05969
TID=OsAffx.11679.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6072010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60690OsAffx.23876.1.S1_x_at11/111+35421295..35421801hypothetical protein
LOC_Os01g60700Os.32685.1.S1_at11/111+35423026..35427468Protein kinase domain containing protein, expressed
LOC_Os01g60710NANA1+35438768..35439598hypothetical protein
LOC_Os01g60720OsAffx.11679.2.A1_at10/111+35445719..35446849hypothetical protein
LOC_Os01g60720OsAffx.23366.1.S1_at1/111+35445719..35446849hypothetical protein
LOC_Os01g60730Os.35921.2.S1_x_at11/111+35448474..35449835Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g60730Os.35921.1.S1_at11/111+35448474..35449835Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g60740Os.8827.1.S1_at10/111+35456714..35457762Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os01g60750NANA1+35458392..35462509transposon protein, putative, unclassified
LOC_Os01g60760Os.15920.1.S1_at5/111+35465295..35466382hypothetical protein
LOC_Os01g60760Os.29856.1.S1_x_at1/111+35465295..35466382hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11679.2.A1_at--303--9211Chr01:35446784..35446808 (25 bp)
TGCCAACTCTTCCTTATGCAACTAC
LOC_Os01g60720
OsAffx.11679.2.A1_at--129--9031Chr01:35446768..35446792 (25 bp)
TGCAACTACCTAGTATGGCTGCCTA
LOC_Os01g60720
OsAffx.11679.2.A1_at--557--9191Chr01:35446749..35446773 (25 bp)
TGCCTAGTCCTCAACAACCGGTGAT
LOC_Os01g60720
OsAffx.11679.2.A1_at--1131--7551Chr01:35446622..35446646 (25 bp)
GGGCCCTTGTCGACGTCTGAAGTCA
LOC_Os01g60720
OsAffx.11679.2.A1_at--858--5331Chr01:35446604..35446628 (25 bp)
GAAGTCACGACTACAATATTTGCAT
LOC_Os01g60720
OsAffx.11679.2.A1_at--745--7511NONE
GTGGATGCGAGATTAAGACCTTTGA
NONE
OsAffx.11679.2.A1_at--499--2411Chr01:35445873..35445897 (25 bp)
AAAAACCGTTGTCGTGCTCACTTGA
LOC_Os01g60720
OsAffx.11679.2.A1_at--535--3311Chr01:35445855..35445879 (25 bp)
CACTTGACCGTTCTTGGTGGCATGA
LOC_Os01g60720
OsAffx.11679.2.A1_at--333--8271Chr01:35445837..35445861 (25 bp)
GGCATGAGGAACTAGCCATTGGCAT
LOC_Os01g60720
OsAffx.11679.2.A1_at--656--8271Chr01:35445817..35445841 (25 bp)
GGCATGGTGGATACAGGACCTCCTA
LOC_Os01g60720
OsAffx.11679.2.A1_at--404--971Chr01:35445803..35445827 (25 bp)
AGGACCTCCTAAGGGCTCGACATGT
LOC_Os01g60720
Target Sequence 
TGCCAACTCTTCCTTATGCAACTACCTAGTATGGCTGCCTAGTCCTCAACAACCGGTGATTGAAAGCACATGCCATGGTG
GCAATGTGGAGGTGGAGCTCGTCGGGCCCTTGTCGACGTCTGAAGTCACGACTACAATATTTGCATGGTATGGGGATCGT
TGGTACCAGGGTGGATGCGAGATTAAGACCTTTGAAAAACCGTTGTCGTGCTCACTTGACCGTTCTTGGTGGCATGAGGA
ACTAGCCATTGGCATGGTGGATACAGGACCTCCTAAGGGCTCGACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11679.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis