Browse Element(s) Details


OsAffx.11689.1.S1_s_at

Description gb:NM_190496.1
DB_XREF= gi:34908075
GEN=P0506B12.27
TID=OsAffx.11689.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0506B12.27 (P0506B12.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6200011/11Pectate lyase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61950OsAffx.21764.1.S1_at11/111+36193638..36194192hypothetical protein
LOC_Os01g61960OsAffx.23888.1.S1_at11/111+36195770..36196597hypothetical protein
LOC_Os01g61970Os.6681.1.S1_at10/111+36197920..36200047Lung seven transmembrane receptor family protein, expressed
LOC_Os01g61980Os.6795.1.S1_at11/111+36207873..36209261expressed protein
LOC_Os01g61990Os.16933.1.S1_at10/111+36211621..36215258ankyrin repeat family protein, putative, expressed
LOC_Os01g62000OsAffx.11689.1.S1_s_at11/111+36216652..36218214Pectate lyase family protein
LOC_Os01g62010Os.36919.2.S1_s_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_x_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62020Os.9835.2.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020Os.9835.1.S1_a_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020OsAffx.11691.1.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62030OsAffx.9560.1.S1_at11/111+36227584..36228075disease resistance-responsive family protein, putative
LOC_Os01g62040Os.38033.3.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.3.S1_x_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.1.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.2.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62050OsAffx.21763.2.S1_s_at11/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.2.S1_at10/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.1.S1_at2/111+36235334..36235956hypothetical protein
LOC_Os01g62060Os.30998.1.S1_at11/111+36238933..36240170uncharacterized plant-specific domain TIGR01589 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0042547biological_processcell wall modification during multidimensional cell growth
GO:0031225cellular_componentanchored to membrane
GO:0046658cellular_componentanchored to plasma membrane
GO:0016829molecular_functionlyase activity
GO:0030570molecular_functionpectate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11689.1.S1_s_at--1033--5011Chr01:36217410..36217434 (25 bp)
GCAGGGTGCACCTCTACAACAACTA
LOC_Os01g62000
OsAffx.11689.1.S1_s_at--687--4951Chr01:36217449..36217473 (25 bp)
GCATTTACGCTGTCTGCGCCAGTGT
LOC_Os01g62000
OsAffx.11689.1.S1_s_at--1026--7211Chr01:36217472..36217730 (25 bp)
GTCGAGTCACAGATTGTATCCCAGT
LOC_Os01g62000
OsAffx.11689.1.S1_s_at--1--6911Chr01:36217721..36217745 (25 bp)
GTATCCCAGTGCAACATTTACGAGG
LOC_Os01g62000
OsAffx.11689.1.S1_s_at--763--8351Chr01:36217926..36217950 (25 bp)
GGCGGCAGACAGAGACCAGAGTTCA
LOC_Os01g62000
OsAffx.11689.1.S1_s_at--660--2551Chr01:36217950..36217974 (25 bp)
AACTGGGTTCATCCGGTCTGAAGGC
LOC_Os01g62000
OsAffx.11689.1.S1_s_at--196--8971Chr01:36217968..36217992 (25 bp)
TGAAGGCGACCTGTTCCTGAACGGT
LOC_Os01g62000
OsAffx.11689.1.S1_s_at--66--991Chr01:36217997..36218021 (25 bp)
AGGAGTGCACTGCTCAGGATTCAGA
LOC_Os01g62000
OsAffx.11689.1.S1_s_at--1042--171Chr01:36218066..36218090 (25 bp)
ATTTCTACCAGTCTTGTTCCGTTCA
LOC_Os01g62000
OsAffx.11689.1.S1_s_at--803--971Chr01:36218111..36218135 (25 bp)
AGGAGCTACTGGAGTGCTTCACCGG
LOC_Os01g62000
OsAffx.11689.1.S1_s_at--287--9191Chr01:36218153..36218177 (25 bp)
TGCCGGAAGACACTTGCCTCGAAGA
LOC_Os01g62000
Target Sequence 
GCAGGGTGCACCTCTACAACAACTACACCAGGGGCTGGGGCATTTACGCTGTCTGCGCCAGTGTCGAGTCACAGATTGTA
TCCCAGTGCAACATTTACGAGGCAGGGGAGAAGAAGAAAGTCTTCAAGTACATGATAGAACAGGCGGCAGACAGAGACCA
GAGTTCAACTGGGTTCATCCGGTCTGAAGGCGACCTGTTCCTGAACGGTGCAGAGGAGTGCACTGCTCAGGATTCAGAAG
CTGCGGCAGATGAGCTGTGGGACTTCAAGATTCAGGAATTGGATTTCTACCAGTCTTGTTCCGTTCAGCCGGCGTCAATG
GCGCTCAAGGAGCTACTGGAGTGCTTCACCGGCTGGCAGCCAGTTCCGCTGCCGGAAGACACTTGCCTCGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11689.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis